Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400034549 | Potato | cytosol | 94.43 | 93.39 |
| KRH51159 | Soybean | cytosol | 55.71 | 60.24 |
| VIT_00s0187g00240.t01 | Wine grape | nucleus | 57.66 | 60.17 |
| VIT_00s0187g00190.t01 | Wine grape | cytosol | 57.94 | 59.94 |
| KRH01994 | Soybean | cytosol | 54.87 | 59.88 |
| CDY27449 | Canola | nucleus | 52.37 | 58.02 |
| CDX76378 | Canola | cytosol | 52.37 | 55.13 |
| Bra020851.1-P | Field mustard | nucleus | 49.03 | 54.83 |
| Bra019378.1-P | Field mustard | cytosol | 53.48 | 52.75 |
| CDX98747 | Canola | nucleus | 53.2 | 52.33 |
| CDX79150 | Canola | nucleus | 50.7 | 52.0 |
| CDX94096 | Canola | nucleus | 53.48 | 51.47 |
| Bra013614.1-P | Field mustard | nucleus | 51.25 | 51.25 |
| TraesCS7D01G242300.1 | Wheat | plastid | 33.7 | 51.05 |
| AT4G22360.1 | Thale cress | nucleus | 54.6 | 50.91 |
| GSMUA_Achr1P19520_001 | Banana | cytosol | 47.63 | 46.34 |
| GSMUA_Achr3P11900_001 | Banana | cytosol | 46.24 | 45.48 |
| KXG27277 | Sorghum | cytosol | 44.29 | 40.25 |
| Os04t0665500-01 | Rice | cytosol | 42.34 | 39.28 |
| HORVU7Hr1G049900.8 | Barley | cytosol, nucleus, plastid | 35.38 | 37.69 |
| HORVU2Hr1G109030.1 | Barley | cytosol | 42.34 | 37.07 |
| Zm00001d026541_P001 | Maize | cytosol | 40.39 | 36.99 |
| Os08t0502800-01 | Rice | nucleus | 41.78 | 36.95 |
| TraesCS2D01G488600.1 | Wheat | cytosol | 42.62 | 36.78 |
| TraesCS2A01G488300.1 | Wheat | cytosol | 42.34 | 36.63 |
| Zm00001d001937_P003 | Maize | cytosol | 43.18 | 36.05 |
| TraesCS7A01G243700.1 | Wheat | cytosol | 41.5 | 35.65 |
| KXG25652 | Sorghum | nucleus | 41.78 | 35.05 |
| TraesCS2B01G515900.1 | Wheat | plastid | 34.54 | 34.93 |
| Zm00001d052873_P001 | Maize | cytosol | 41.23 | 34.82 |
| Solyc01g108290.2.1 | Tomato | nucleus | 28.41 | 30.63 |
| Solyc08g005590.2.1 | Tomato | nucleus | 9.75 | 28.69 |
| Solyc02g065160.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 21.45 | 27.02 |
| Solyc08g075400.2.1 | Tomato | plastid | 9.19 | 26.61 |
| Solyc01g107330.2.1 | Tomato | plastid | 9.75 | 23.97 |
Protein Annotations
| EnsemblPlants:Solyc11g012290.1.1 | EnsemblPlantsGene:Solyc11g012290.1 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DEK_C | InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | PANTHER:PTHR13844 |
| PANTHER:PTHR13844:SF10 | PFAM:PF02201 | PFAM:PF08766 | SEG:seg | SMART:SM00151 | SUPFAM:SSF47592 |
| UniParc:UPI0002769F65 | UniProt:K4D634 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr11:+:5148298..5151054
Molecular Weight (calculated)
40151.1 Da
IEP (calculated)
7.948
GRAVY (calculated)
-0.472
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDQEIARG VENLLRQSDP NAVTSLNCVV QQLGAKLGQD LSHKAEFISD QINLLRSQPP QLISPPLMVK DHFTLLNHPQ FANTQAQQQF YSHFALQQQH
101: HHHQHQQQQL YFQHHVPPLM SPQQQQHRQP QVQIQAPAPV VARTAAAPAQ HASSNVPSAP KESATSGTKR RGGPGGLNKV CGVSPELQAI VGQPAMPRTE
201: IVKQLWVYIR KHNLQDPGNK RKIICNDALR ALFETDCTDM FKMNKLLAKH ITALDPSKQV DQAKRLKVEA DSVATKVEQP VSSTVTISDA LAKFFESEEK
301: EILQTDAVKR IWDYIKLNQL EDPVNSTMIV CDPKLQELLQ CESVSATELP EMLAGRHFV
101: HHHQHQQQQL YFQHHVPPLM SPQQQQHRQP QVQIQAPAPV VARTAAAPAQ HASSNVPSAP KESATSGTKR RGGPGGLNKV CGVSPELQAI VGQPAMPRTE
201: IVKQLWVYIR KHNLQDPGNK RKIICNDALR ALFETDCTDM FKMNKLLAKH ITALDPSKQV DQAKRLKVEA DSVATKVEQP VSSTVTISDA LAKFFESEEK
301: EILQTDAVKR IWDYIKLNQL EDPVNSTMIV CDPKLQELLQ CESVSATELP EMLAGRHFV
001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.