Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0187g00240.t01 | Wine grape | nucleus | 97.41 | 98.26 |
| KRH01994 | Soybean | cytosol | 66.86 | 70.52 |
| KRH51159 | Soybean | cytosol | 66.86 | 69.88 |
| VIT_19s0090g01460.t01 | Wine grape | cytosol | 59.94 | 62.84 |
| CDY27449 | Canola | nucleus | 58.21 | 62.35 |
| CDX76378 | Canola | cytosol | 59.65 | 60.7 |
| CDX79150 | Canola | nucleus | 60.81 | 60.29 |
| Bra019378.1-P | Field mustard | cytosol | 63.11 | 60.16 |
| Bra020851.1-P | Field mustard | nucleus | 55.62 | 60.12 |
| CDX98747 | Canola | nucleus | 62.82 | 59.73 |
| PGSC0003DMT400034549 | Potato | cytosol | 62.25 | 59.5 |
| Bra013614.1-P | Field mustard | nucleus | 61.1 | 59.05 |
| CDX94096 | Canola | nucleus | 62.82 | 58.45 |
| Solyc11g012290.1.1 | Tomato | cytosol | 59.94 | 57.94 |
| AT4G22360.1 | Thale cress | nucleus | 63.69 | 57.4 |
| TraesCS7D01G242300.1 | Wheat | plastid | 39.19 | 57.38 |
| GSMUA_Achr1P19520_001 | Banana | cytosol | 54.18 | 50.95 |
| GSMUA_Achr3P11900_001 | Banana | cytosol | 52.74 | 50.14 |
| HORVU7Hr1G049900.8 | Barley | cytosol, nucleus, plastid | 41.79 | 43.03 |
| KXG27277 | Sorghum | cytosol | 48.41 | 42.53 |
| Os04t0665500-01 | Rice | cytosol | 46.97 | 42.12 |
| Os08t0502800-01 | Rice | nucleus | 47.84 | 40.89 |
| HORVU2Hr1G109030.1 | Barley | cytosol | 47.84 | 40.49 |
| TraesCS2A01G488300.1 | Wheat | cytosol | 48.13 | 40.24 |
| Zm00001d052873_P001 | Maize | cytosol | 49.28 | 40.24 |
| KXG25652 | Sorghum | nucleus | 49.57 | 40.19 |
| TraesCS2D01G488600.1 | Wheat | cytosol | 47.84 | 39.9 |
| Zm00001d026541_P001 | Maize | cytosol | 44.96 | 39.8 |
| TraesCS7A01G243700.1 | Wheat | cytosol | 47.26 | 39.23 |
| TraesCS2B01G515900.1 | Wheat | plastid | 39.77 | 38.87 |
| Zm00001d001937_P003 | Maize | cytosol | 47.84 | 38.6 |
| VIT_03s0063g01070.t01 | Wine grape | nucleus | 13.26 | 36.8 |
| VIT_15s0024g00650.t01 | Wine grape | mitochondrion | 12.39 | 33.59 |
| VIT_03s0091g00430.t01 | Wine grape | plastid | 12.97 | 31.03 |
| VIT_07s0197g00070.t01 | Wine grape | nucleus | 26.51 | 30.87 |
| VIT_02s0087g00810.t01 | Wine grape | mitochondrion | 9.22 | 27.83 |
Protein Annotations
| Gene3D:1.10.245.10 | EntrezGene:100267408 | wikigene:100267408 | MapMan:35.2 | ProteinID:CBI33108 | ProteinID:CBI33108.3 |
| UniProt:D7TRI3 | InterPro:DEK_C | EMBL:FN596025 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR036885 | EntrezGene:LOC100267408 | wikigene:LOC100267408 | PFAM:PF02201 | PFAM:PF08766 | PANTHER:PTHR13844 |
| PANTHER:PTHR13844:SF10 | SMART:SM00151 | SUPFAM:SSF47592 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain |
| TIGR:TC52086 | UniParc:UPI000198619B | ArrayExpress:VIT_00s0187g00190 | EnsemblPlantsGene:VIT_00s0187g00190 | EnsemblPlants:VIT_00s0187g00190.t01 | unigene:Vvi.16590 |
| RefSeq:XP_002278125 | RefSeq:XP_002278125.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrUn:-:9130396..9135076
Molecular Weight (calculated)
38707.4 Da
IEP (calculated)
7.730
GRAVY (calculated)
-0.468
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDQDIAKG VETLLRQSEP NSFTSLNGIV KQLEAKLGLD LSHKAVFIRD QISFLLRSHP QPLPPKDHFA LQQHPQFLSP HPQIPSHFAL QHHRPPPEDL
101: NFLYPLPQPQ PQTQTQPQPQ PQTQPHHLPK GEAFLQNAAS VAAQAPKESA PAAAKRRGGS GGLNKVCGVS TELQAVVGEP TMPRTQIVKQ LWAYIRKNNL
201: QDPSNKRKII CDDALRLVFE TDSTDMFKMN KLLAKHIIPL EPSRESSQAK RLKVDVESAT ESSEASPSPV MISDALATFF GTGEREMLQE EALRRVWEYI
301: KVNQLEDPLN SMAILCDAKL QELFGCESIS ALGVSEMLAR HHLFKRS
101: NFLYPLPQPQ PQTQTQPQPQ PQTQPHHLPK GEAFLQNAAS VAAQAPKESA PAAAKRRGGS GGLNKVCGVS TELQAVVGEP TMPRTQIVKQ LWAYIRKNNL
201: QDPSNKRKII CDDALRLVFE TDSTDMFKMN KLLAKHIIPL EPSRESSQAK RLKVDVESAT ESSEASPSPV MISDALATFF GTGEREMLQE EALRRVWEYI
301: KVNQLEDPLN SMAILCDAKL QELFGCESIS ALGVSEMLAR HHLFKRS
001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.