Factsheet for VIT_00s0187g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0187g00190.t01	Wine grape	cytosol	98.26	97.41
KRH01994	Soybean	cytosol	67.44	70.52
KRH51159	Soybean	cytosol	67.15	69.58
VIT_19s0090g01460.t01	Wine grape	cytosol	60.47	62.84
CDY27449	Canola	nucleus	59.01	62.65
CDX76378	Canola	cytosol	60.47	61.0
CDX79150	Canola	nucleus	61.92	60.86
Bra019378.1-P	Field mustard	cytosol	63.95	60.44
Bra020851.1-P	Field mustard	nucleus	56.1	60.12
CDX98747	Canola	nucleus	63.66	60.0
Bra013614.1-P	Field mustard	nucleus	62.21	59.61
PGSC0003DMT400034549	Potato	cytosol	62.5	59.23
CDX94096	Canola	nucleus	63.66	58.71
Solyc11g012290.1.1	Tomato	cytosol	60.17	57.66
TraesCS7D01G242300.1	Wheat	plastid	39.53	57.38
AT4G22360.1	Thale cress	nucleus	63.95	57.14
GSMUA_Achr1P19520_001	Banana	cytosol	54.36	50.68
GSMUA_Achr3P11900_001	Banana	cytosol	52.91	49.86
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	42.15	43.03
KXG27277	Sorghum	cytosol	48.84	42.53
Os04t0665500-01	Rice	cytosol	47.09	41.86
Os08t0502800-01	Rice	nucleus	48.84	41.38
HORVU2Hr1G109030.1	Barley	cytosol	48.55	40.73
TraesCS2A01G488300.1	Wheat	cytosol	48.84	40.48
Zm00001d052873_P001	Maize	cytosol	49.71	40.24
KXG25652	Sorghum	nucleus	50.0	40.19
TraesCS2D01G488600.1	Wheat	cytosol	48.55	40.14
Zm00001d026541_P001	Maize	cytosol	45.35	39.8
TraesCS7A01G243700.1	Wheat	cytosol	47.97	39.47
TraesCS2B01G515900.1	Wheat	plastid	40.12	38.87
Zm00001d001937_P003	Maize	cytosol	48.26	38.6
VIT_03s0063g01070.t01	Wine grape	nucleus	13.37	36.8
VIT_15s0024g00650.t01	Wine grape	mitochondrion	12.21	32.81
VIT_07s0197g00070.t01	Wine grape	nucleus	27.03	31.21
VIT_03s0091g00430.t01	Wine grape	plastid	13.08	31.03
VIT_02s0087g00810.t01	Wine grape	mitochondrion	9.3	27.83

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100853436	wikigene:100853436	MapMan:35.2	EMBL:AM477120	ProteinID:CAN72895
ProteinID:CAN72895.1	ProteinID:CBI33113	ProteinID:CBI33113.3	UniProt:D7TRI8	InterPro:DEK_C	EMBL:FN596025
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	EntrezGene:LOC100853436	wikigene:LOC100853436
PFAM:PF02201	PFAM:PF08766	PANTHER:PTHR13844	PANTHER:PTHR13844:SF10	SMART:SM00151	SUPFAM:SSF47592
InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI0001BE3CE8	ArrayExpress:VIT_00s0187g00240	EnsemblPlantsGene:VIT_00s0187g00240
EnsemblPlants:VIT_00s0187g00240.t01	RefSeq:XP_003635018	RefSeq:XP_003635018.1	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:-:9167334..9171675

Molecular Weight (calculated)

38457.2 Da

IEP (calculated)

8.067

GRAVY (calculated)

-0.476

Length

344 amino acids

Sequence
(BLAST)

001: MVSDQDIAKG VETLLRQSEP NSFTSLNGVV KQLEAKLGLD LSHKAVFIRD QISFLLRSHP QPLPPKDHFA LQQHPQFLSP HPQIPSHFAL QHHRPPPEDL
101: NFLYPLPQPQ QHQPQTQPQP QPHHLPKGEA FLQNAASVAA QAPKESAPAA PKRRGGSGGL NKVCGVSTEL QAVVGEPTMP RTQIVKQLWA YIRKNNLQDP
201: SNKRKIICDD ALRLVFETDS TDMFKMNKLL AKHIIPLEPS RESSQAKRLK VDVESATESS EASPSPVMIS DALATFFGTG EREMLQEEAL RRVWEYIKVN
301: QLEDPLNSMA ILCDAKLREL FGCESISALG VSEMLARHHL FKRS

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.