Factsheet for TraesCS7D01G242300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	93.67	65.88
TraesCS7A01G243700.1	Wheat	cytosol	95.78	54.31
Os08t0502800-01	Rice	nucleus	79.75	46.55
KXG25652	Sorghum	nucleus	74.68	41.36
Zm00001d052873_P001	Maize	cytosol	73.42	40.94
VIT_00s0187g00240.t01	Wine grape	nucleus	57.38	39.53
VIT_00s0187g00190.t01	Wine grape	cytosol	57.38	39.19
KRH46275	Soybean	cytosol	54.43	39.09
VIT_19s0090g01460.t01	Wine grape	cytosol	54.43	38.97
KRH01994	Soybean	cytosol	52.74	37.99
KRH51159	Soybean	cytosol	52.74	37.65
CDY27449	Canola	nucleus	48.95	35.8
CDX79150	Canola	nucleus	51.05	34.57
CDX76378	Canola	cytosol	48.95	34.02
Solyc11g012290.1.1	Tomato	cytosol	51.05	33.7
PGSC0003DMT400034549	Potato	cytosol	51.05	33.33
CDX98747	Canola	nucleus	51.05	33.15
Bra013614.1-P	Field mustard	nucleus	50.21	33.15
Bra019378.1-P	Field mustard	cytosol	50.63	32.97
AT4G22360.1	Thale cress	nucleus	52.74	32.47
Bra020851.1-P	Field mustard	nucleus	43.88	32.4
CDX94096	Canola	nucleus	50.63	32.17
TraesCS2D01G488600.1	Wheat	cytosol	52.32	29.81
TraesCS5D01G411700.1	Wheat	nucleus	39.66	27.65
TraesCS5D01G408400.1	Wheat	plastid	13.92	23.74
TraesCS5D01G115900.1	Wheat	plastid	13.92	21.57

Protein Annotations

EnsemblPlants:TraesCS7D01G242300.1	EnsemblPlantsGene:TraesCS7D01G242300	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF10
PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	MapMan:35.2	:

Description

No Description!

Coordinates

chr7D:+:206987880..206991358

Molecular Weight (calculated)

25798.9 Da

IEP (calculated)

8.122

GRAVY (calculated)

-0.419

Length

237 amino acids

Sequence
(BLAST)

001: MAAAANAATA AASPRAPVAE SPRGAASART KKESASTGVK RRGGPGGLNK ICGVSPELQA IVGEPTMART EIVKQLWAYI RRNDLQDPNN KRKIICNDEL
101: RLVFETDCTD MFKMNKLLAK HIKPLEPTNS NRDMKKLKPV EDVPVPLAED VATNQPPLNV SDALASFFGT GEREMSQSEV VKCVWDHIKS NNLEDPSNPT
201: MILCDSKLKD LFGCESVTAS AVSELLSDHL FKQPNKI

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.