Factsheet for TraesCS7A01G243700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G242300.1	Wheat	plastid	54.31	95.78
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	74.16	91.99
Os08t0502800-01	Rice	nucleus	65.79	67.73
KXG25652	Sorghum	nucleus	62.68	61.22
Zm00001d052873_P001	Maize	cytosol	60.05	59.06
VIT_00s0187g00240.t01	Wine grape	nucleus	39.47	47.97
VIT_00s0187g00190.t01	Wine grape	cytosol	39.23	47.26
VIT_19s0090g01460.t01	Wine grape	cytosol	36.6	46.22
KRH01994	Soybean	cytosol	36.12	45.9
KRH46275	Soybean	cytosol	36.12	45.76
CDY27449	Canola	nucleus	35.41	45.68
KRH51159	Soybean	cytosol	36.12	45.48
CDX76378	Canola	cytosol	35.89	43.99
CDX79150	Canola	nucleus	36.12	43.14
Bra020851.1-P	Field mustard	nucleus	33.01	42.99
Bra013614.1-P	Field mustard	nucleus	36.12	42.06
CDX98747	Canola	nucleus	36.6	41.92
Bra019378.1-P	Field mustard	cytosol	36.36	41.76
Solyc11g012290.1.1	Tomato	cytosol	35.65	41.5
CDX94096	Canola	nucleus	36.84	41.29
PGSC0003DMT400034549	Potato	cytosol	35.65	41.05
AT4G22360.1	Thale cress	nucleus	37.8	41.04
TraesCS2A01G488300.1	Wheat	cytosol	40.67	40.96
TraesCS5A01G401500.2	Wheat	nucleus	26.79	32.75
TraesCS5A01G398800.1	Wheat	plastid	8.61	25.71
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	8.13	23.29
TraesCS5A01G105100.1	Wheat	plastid	8.37	22.58

Protein Annotations

EnsemblPlants:TraesCS7A01G243700.1	EnsemblPlantsGene:TraesCS7A01G243700	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	ncoils:Coil	PANTHER:PTHR13844
PANTHER:PTHR13844:SF10	PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	MapMan:35.2

Description

No Description!

Coordinates

chr7A:+:219749281..219753581

Molecular Weight (calculated)

42706.3 Da

IEP (calculated)

8.237

GRAVY (calculated)

-0.556

Length

418 amino acids

Sequence
(BLAST)

001: MVSDQELARY VESFVRQAAA LPGAAAAGIS PDAVVRQLQA QLGVDXXXXX XXXXXXXXXX XXXXXXXXXX XXXHFAPASS PHAQPHFSTT TTASASAPAG
101: VPHFFSQQPT PQQLQSYYAA SQQYQQQHHH QQQQHRASPP ASSPYDAPGS FRYAQPGEAQ LQRLVQLQQY HQQQQQHQQQ MTAAANAATA AASPRGPVSE
201: SPRGAAPARA KKESASTGVK RRGGPGGLNK ICGVSPELQA IVGEPTMART EIVKQLWAYI RRNDLQDPNN KRKIICNDEL RLVFETDCTD MFKMNKLLAK
301: HIKPLEPTKD SNRDMKKLKP VEDVPVPLAE DVATNQLPVN VSDALASFFG TGEREMSQSE VVKRVWDHIK SNNLEDPSNP TMILCDSKLK DLFGCESVTA
401: PAVSELLSDH LFKQPNKI

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.