Factsheet for HORVU7Hr1G049900.8

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G242300.1	Wheat	plastid	65.88	93.67
TraesCS7A01G243700.1	Wheat	cytosol	91.99	74.16
Os08t0502800-01	Rice	nucleus	71.22	59.11
KXG25652	Sorghum	nucleus	67.95	53.5
Zm00001d052873_P001	Maize	cytosol	64.99	51.53
VIT_19s0090g01460.t01	Wine grape	cytosol	42.14	42.9
KRH46275	Soybean	cytosol	41.54	42.42
VIT_00s0187g00240.t01	Wine grape	nucleus	43.03	42.15
VIT_00s0187g00190.t01	Wine grape	cytosol	43.03	41.79
KRH01994	Soybean	cytosol	40.06	41.03
KRH51159	Soybean	cytosol	40.06	40.66
CDY27449	Canola	nucleus	37.39	38.89
CDX76378	Canola	cytosol	38.87	38.42
CDX79150	Canola	nucleus	38.87	37.43
Bra013614.1-P	Field mustard	nucleus	39.17	36.77
Bra020851.1-P	Field mustard	nucleus	35.01	36.76
AT4G22360.1	Thale cress	nucleus	41.54	36.36
Bra019378.1-P	Field mustard	cytosol	39.17	36.26
CDX98747	Canola	nucleus	39.17	36.16
HORVU2Hr1G109030.1	Barley	cytosol	43.32	35.61
CDX94096	Canola	nucleus	39.17	35.39
Solyc11g012290.1.1	Tomato	cytosol	37.69	35.38
PGSC0003DMT400034549	Potato	cytosol	37.69	34.99
HORVU5Hr1G097590.1	Barley	nucleus	28.78	27.17
HORVU5Hr1G028290.1	Barley	plastid	9.79	21.57
HORVU6Hr1G015440.1	Barley	plastid	9.2	14.9

Protein Annotations

EnsemblPlants:HORVU7Hr1G049900.8	EnsemblPlantsGene:HORVU7Hr1G049900	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF10
PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI000B474C14	UniProt:A0A287WFR8
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:176510853..176515439

Molecular Weight (calculated)

37217.7 Da

IEP (calculated)

8.475

GRAVY (calculated)

-0.756

Length

337 amino acids

Sequence
(BLAST)

001: HAQPHFATTT TTSASASAPA GAPHFFSQQP TQQQLQSYYA ASQQYQQQQQ QQHRAGSPAS SPYDAPGSFR YAQPGDAQLQ RLVQLQQYQQ QQQHHHQQQM
101: AAAANAATAV ASPRGPVAES PRGAASARTK KESASTGVKR RGGPGGLNKI CGVSPELQAI VGEPTMARTE IVKQLWAYIR RNDLQDPNNK RKIICNDELR
201: LVFETDCTDM FKMNKLLSKH IRPLEPTKDS NRDMKKLKPV EDEHVPPAED VATNQPPVNV SDALASFFGT EEREMTQSEV VKRVWDHIKS NNLEDPSNPT
301: MILCDSKLKD LFGCESVTAP GVSELLSAHL FKQPNKI

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.