CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g01460.t01	Wine grape	cytosol	61.82	61.63
KRH01994	Soybean	cytosol	56.67	56.84
KRH51159	Soybean	cytosol	56.06	55.72
TraesCS7D01G242300.1	Wheat	plastid	39.09	54.43
GSMUA_Achr1P19520_001	Banana	cytosol	50.91	45.53
GSMUA_Achr3P11900_001	Banana	cytosol	48.48	43.84
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	42.42	41.54
Os04t0665500-01	Rice	cytosol	44.55	37.98
KXG27277	Sorghum	cytosol	45.15	37.72
Os08t0502800-01	Rice	nucleus	45.45	36.95
TraesCS7A01G243700.1	Wheat	cytosol	45.76	36.12
HORVU2Hr1G109030.1	Barley	cytosol	44.85	36.1
Zm00001d026541_P001	Maize	cytosol	42.73	35.97
TraesCS2B01G515900.1	Wheat	plastid	38.48	35.77
TraesCS2A01G488300.1	Wheat	cytosol	44.24	35.18
TraesCS2D01G488600.1	Wheat	cytosol	44.24	35.1
Zm00001d001937_P003	Maize	cytosol	45.15	34.65
Zm00001d052873_P001	Maize	cytosol	43.94	34.12
KXG25652	Sorghum	nucleus	43.94	33.88
KRH76467	Soybean	nucleus	11.82	29.55
KRH28989	Soybean	mitochondrion, plastid	11.82	29.55
KRH76945	Soybean	nucleus	30.0	29.38
KRH77941	Soybean	nucleus	12.12	28.78
KRH28515	Soybean	nucleus	30.0	28.61
KRH27569	Soybean	nucleus	12.73	28.38

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:100801960	MapMan:35.2	EMBL:ACUP02005336	InterPro:DEK_C	EnsemblPlantsGene:GLYMA_08G324000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1KYE8	InterPro:IPR036885	ProteinID:KRH46274.1
EnsemblPlants:KRH46275	ProteinID:KRH46275	ProteinID:KRH46275.1	PFAM:PF02201	PFAM:PF08766	PANTHER:PTHR13844
PANTHER:PTHR13844:SF10	SMART:SM00151	SUPFAM:SSF109715	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain
InterPro:SWIB_domain	UniParc:UPI0000E6470E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:44220818..44225124

Molecular Weight (calculated)

36519.9 Da

IEP (calculated)

8.235

GRAVY (calculated)

-0.346

Length

330 amino acids

Sequence
(BLAST)

001: MVTEEEISEA VQSLLRESNP SRFTTLNQVV EELQAKLGHD LTHKIDFITA QINLLFGSRQ PPQNPHRQLQ QPKDHFAPPP NPNFHSAPVS VGFQLQNFSS
101: SNAVVAAATA ADASRIEAPS APVVVEGNQV PKESTQTKVK RRGGPGGLTK ICGVSPELQV IVGQPALSRT EIVKQLWAYI RKNNLQDPSN KRKIICNDEL
201: RVVFETDCTD MFKMNKLLSK HIIPLEPTKK PVPKKQKVDV ESGTRSAEPT PSVIISDALA NFFGITGREM LQSEVLRRIW EYIKVNQLED PANPMAIVCD
301: GKLQEIFGCE SISALGIPEV LGRHHIFRSS

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.