CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026541_P001	Maize	cytosol	84.81	85.46
Zm00001d001937_P003	Maize	cytosol	90.63	83.26
Os04t0665500-01	Rice	cytosol	73.92	75.45
TraesCS2A01G488300.1	Wheat	cytosol	74.18	70.6
TraesCS2D01G488600.1	Wheat	cytosol	74.18	70.43
HORVU2Hr1G109030.1	Barley	cytosol	72.15	69.51
TraesCS2B01G515900.1	Wheat	plastid	62.03	69.01
GSMUA_Achr1P19520_001	Banana	cytosol	51.65	55.28
GSMUA_Achr3P11900_001	Banana	cytosol	48.35	52.33
VIT_00s0187g00240.t01	Wine grape	nucleus	42.53	48.84
VIT_19s0090g01460.t01	Wine grape	cytosol	40.76	48.64
VIT_00s0187g00190.t01	Wine grape	cytosol	42.53	48.41
KRH01994	Soybean	cytosol	38.99	46.81
KRH51159	Soybean	cytosol	39.24	46.69
CDY27449	Canola	nucleus	37.97	46.3
KRH46275	Soybean	cytosol	37.72	45.15
Solyc11g012290.1.1	Tomato	cytosol	40.25	44.29
PGSC0003DMT400034549	Potato	cytosol	40.25	43.8
CDX76378	Canola	cytosol	37.47	43.4
CDX98747	Canola	nucleus	39.49	42.74
Bra019378.1-P	Field mustard	cytosol	39.24	42.58
CDX79150	Canola	nucleus	37.47	42.29
Bra020851.1-P	Field mustard	nucleus	33.92	41.74
Bra013614.1-P	Field mustard	nucleus	37.47	41.23
CDX94096	Canola	nucleus	38.48	40.75
KXG25652	Sorghum	nucleus	43.8	40.42
AT4G22360.1	Thale cress	nucleus	38.23	39.22
EER93399	Sorghum	nucleus	26.58	32.21
EES06225	Sorghum	mitochondrion	9.37	28.24
EES17082	Sorghum	plastid	10.38	27.89
EER90846	Sorghum	plastid	9.87	27.27

Protein Annotations

Gene3D:1.10.245.10	MapMan:35.2	EntrezGene:8082561	UniProt:C5Y9Z5	InterPro:DEK_C	ProteinID:EES11608.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	EnsemblPlants:KXG27277	ProteinID:KXG27277
ProteinID:KXG27277.2	PFAM:PF02201	PFAM:PF08766	PANTHER:PTHR13844	PANTHER:PTHR13844:SF19	SMART:SM00151
EnsemblPlantsGene:SORBI_3006G256100	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	unigene:Sbi.20729
UniParc:UPI0001A87277	RefSeq:XP_002447280.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:59297416..59302053

Molecular Weight (calculated)

42225.7 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.307

Length

395 amino acids

Sequence
(BLAST)

001: MVSDQEIASC VESVLRGSAG GPGEASLAAV LQQAEATLGV DLSHKAGFIR DQMDLFFGPN LQPQPPTKPQ PAPPPPQALV ASSAAVPQLQ PQHQHQVLPQ
101: VQGQPQAPPP DQQLQPQLPQ LQPRLVFQTI PQLPAMAPVP AVSAPPAVPA MAFYPPPPLA FRYTTGLAGA ATGGTVSFQQ PAPGAGGTAP PTAAAPQVAG
201: DNKESASKRK RGGPGGLNKV CAISPELQTI VGETAMSRTQ IVKQLWAYIR QNNLQDPDDK RKIICNDELR VVFETDTTDM FKMNKLLAKH ITPLDPKDQV
301: KRMKAPTVAP QPGPPINQPS VVISDALAKF IGTDGTFPQD DAQKYLWDYI KANQLEDVIN ESILCDSKLQ ELFGCESIPM SGLSEMLGHH FIKKT

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.