Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020851.1-P | Field mustard | nucleus | 90.03 | 95.64 |
| CDY27449 | Canola | nucleus | 88.27 | 92.9 |
| CDX98747 | Canola | nucleus | 87.68 | 81.92 |
| CDX94096 | Canola | nucleus | 85.92 | 78.55 |
| CDX79150 | Canola | nucleus | 78.3 | 76.29 |
| AT4G22360.1 | Thale cress | nucleus | 83.58 | 74.03 |
| KRH01994 | Soybean | cytosol | 59.53 | 61.7 |
| KRH51159 | Soybean | cytosol | 59.82 | 61.45 |
| VIT_00s0187g00240.t01 | Wine grape | nucleus | 61.0 | 60.47 |
| VIT_00s0187g00190.t01 | Wine grape | cytosol | 60.7 | 59.65 |
| Solyc11g012290.1.1 | Tomato | cytosol | 55.13 | 52.37 |
| PGSC0003DMT400034549 | Potato | cytosol | 55.13 | 51.79 |
| TraesCS7D01G242300.1 | Wheat | plastid | 34.02 | 48.95 |
| GSMUA_Achr3P11900_001 | Banana | cytosol | 49.85 | 46.58 |
| GSMUA_Achr1P19520_001 | Banana | cytosol | 50.15 | 46.34 |
| Os08t0502800-01 | Rice | nucleus | 46.92 | 39.41 |
| HORVU7Hr1G049900.8 | Barley | cytosol, nucleus, plastid | 38.42 | 38.87 |
| CDX76269 | Canola | cytosol | 9.68 | 37.5 |
| KXG27277 | Sorghum | cytosol | 43.4 | 37.47 |
| Zm00001d052873_P001 | Maize | cytosol | 46.63 | 37.41 |
| KXG25652 | Sorghum | nucleus | 46.92 | 37.38 |
| Os04t0665500-01 | Rice | cytosol | 41.35 | 36.43 |
| TraesCS7A01G243700.1 | Wheat | cytosol | 43.99 | 35.89 |
| TraesCS2A01G488300.1 | Wheat | cytosol | 43.4 | 35.66 |
| HORVU2Hr1G109030.1 | Barley | cytosol | 42.82 | 35.61 |
| TraesCS2D01G488600.1 | Wheat | cytosol | 43.11 | 35.34 |
| Zm00001d026541_P001 | Maize | cytosol | 40.47 | 35.2 |
| TraesCS2B01G515900.1 | Wheat | plastid | 36.07 | 34.65 |
| Zm00001d001937_P003 | Maize | cytosol | 42.82 | 33.95 |
| CDY49157 | Canola | mitochondrion | 9.09 | 33.33 |
| CDX75421 | Canola | plastid | 13.2 | 32.61 |
| CDY12300 | Canola | mitochondrion | 8.8 | 32.26 |
| CDY45303 | Canola | plastid | 13.2 | 31.91 |
| CDX72477 | Canola | plastid | 12.9 | 31.65 |
| CDY47689 | Canola | mitochondrion | 10.85 | 31.62 |
| CDY69869 | Canola | plastid | 12.61 | 31.39 |
| CDY50950 | Canola | mitochondrion | 10.56 | 31.03 |
| CDY51761 | Canola | mitochondrion | 10.85 | 27.61 |
| CDX92300 | Canola | nucleus | 34.02 | 25.66 |
| CDY50651 | Canola | plastid | 10.85 | 25.34 |
| CDX99270 | Canola | nucleus | 34.31 | 25.22 |
Protein Annotations
| Gene3D:1.10.245.10 | MapMan:35.2 | GO:A0A078CMS2 | EnsemblPlants:CDX76378 | ProteinID:CDX76378 | ProteinID:CDX76378.1 |
| InterPro:DEK_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00126767001 | InterPro:IPR036885 |
| PFAM:PF02201 | PFAM:PF08766 | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF37 | SMART:SM00151 | SUPFAM:SSF109715 |
| SUPFAM:SSF47592 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | UniParc:UPI0004EE3E24 | SEG:seg |
Description
BnaA08g10220D
Coordinates
chrLK031807:-:811057..812974
Molecular Weight (calculated)
37887.1 Da
IEP (calculated)
7.457
GRAVY (calculated)
-0.568
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDQDLARG VETLLRQSDP TSLTSLTSVV HQLEAKLGLD LSDKTNFIRD HINLLLHSPP PPASASSSTP HPPPPQYLQQ LHSGVNVPAK GHFSLHPPSH
101: FALHPSPYHS YDLNFQQPYP PYMPPQHHQR QGPSVSQSPK ASAPAGTKRK GGPGGLNKVC RVSPELQVVV GEPALPRTEI VRQLWAYIRK NNLQDPSNKR
201: KIICDDALRL VFETDCTDMF KMNKLLSKHI LPLDPSKDSG QAKRAKAEVE TKTETETKEP VSSTSSTVSL SEPLAKFFGT GETEMTEEEI IRRVWEYIKL
301: NHLEDSANPM AIQCDEKLRE LLGCESISAV GINEMLRRHI S
101: FALHPSPYHS YDLNFQQPYP PYMPPQHHQR QGPSVSQSPK ASAPAGTKRK GGPGGLNKVC RVSPELQVVV GEPALPRTEI VRQLWAYIRK NNLQDPSNKR
201: KIICDDALRL VFETDCTDMF KMNKLLSKHI LPLDPSKDSG QAKRAKAEVE TKTETETKEP VSSTSSTVSL SEPLAKFFGT GETEMTEEEI IRRVWEYIKL
301: NHLEDSANPM AIQCDEKLRE LLGCESISAV GINEMLRRHI S
001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.