Factsheet for Bra020851.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76378	Canola	cytosol	95.64	90.03
Bra019378.1-P	Field mustard	cytosol	85.36	75.27
Bra013614.1-P	Field mustard	nucleus	78.82	70.47
AT4G22360.1	Thale cress	nucleus	82.24	68.57
VIT_00s0187g00240.t01	Wine grape	nucleus	60.12	56.1
KRH51159	Soybean	cytosol	57.63	55.72
KRH01994	Soybean	cytosol	57.01	55.62
VIT_00s0187g00190.t01	Wine grape	cytosol	60.12	55.62
Solyc11g012290.1.1	Tomato	cytosol	54.83	49.03
PGSC0003DMT400034549	Potato	cytosol	54.83	48.48
TraesCS7D01G242300.1	Wheat	plastid	32.4	43.88
GSMUA_Achr3P11900_001	Banana	cytosol	48.6	42.74
GSMUA_Achr1P19520_001	Banana	cytosol	47.98	41.73
Os08t0502800-01	Rice	nucleus	45.48	35.96
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	36.76	35.01
Zm00001d052873_P001	Maize	cytosol	45.79	34.59
KXG25652	Sorghum	nucleus	45.79	34.35
KXG27277	Sorghum	cytosol	41.74	33.92
HORVU2Hr1G109030.1	Barley	cytosol	42.68	33.41
TraesCS2A01G488300.1	Wheat	cytosol	42.99	33.25
Os04t0665500-01	Rice	cytosol	39.88	33.07
TraesCS7A01G243700.1	Wheat	cytosol	42.99	33.01
TraesCS2D01G488600.1	Wheat	cytosol	42.68	32.93
Bra011519.1-P	Field mustard	plastid	14.02	32.61
Bra023201.1-P	Field mustard	mitochondrion	11.53	32.17
Bra017644.1-P	Field mustard	plastid	14.02	31.91
TraesCS2B01G515900.1	Wheat	plastid	35.2	31.83
Zm00001d026541_P001	Maize	cytosol	38.63	31.63
Bra033879.1-P	Field mustard	mitochondrion	11.21	31.03
Zm00001d001937_P003	Maize	cytosol	40.81	30.47
Bra034617.1-P	Field mustard	cytosol	6.85	26.19
Bra031985.1-P	Field mustard	mitochondrion	12.15	25.49
Bra022384.1-P	Field mustard	nucleus	33.64	23.95

Protein Annotations

EnsemblPlants:Bra020851.1	EnsemblPlants:Bra020851.1-P	EnsemblPlantsGene:Bra020851	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DEK_C	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain
PANTHER:PTHR13844	PANTHER:PTHR13844:SF37	PFAM:PF02201	PFAM:PF08766	SEG:seg	SMART:SM00151
SUPFAM:SSF109715	SUPFAM:SSF47592	UniParc:UPI0002545E08	UniProt:M4DWF7	MapMan:35.2	:

Description

AT4G22360 (E=1e-068) | SWIB complex BAF60b domain-containing protein

Coordinates

chrA08:+:11680808..11682142

Molecular Weight (calculated)

35712.4 Da

IEP (calculated)

7.792

GRAVY (calculated)

-0.651

Length

321 amino acids

Sequence
(BLAST)

001: MVSDQDLARG VETLLRQSDP TSLTSLTSVV HQLEAKLGLD LSDKTNFIRD HINLLLHSPH PPASASSSTP QPPPPRYLQQ LHSGVNVPAK GHFSLHPPSQ
101: QYPPQHFALH PSPPYHSYDL NFQQPYPPYM PPQHHQRQGP SVSQSPKASA PAGTKRKGGP GGLNKVCRVS PELQVVVGEP ALPRTEIVRQ LWAYIRKNNL
201: QDPSNKRKII CDDALRLVFE TDCTDMFKMN KLLSKHILPL DPSKDSGQAK RAKAEVETKA ETETETKEPV SSTSSTVSLS EPLAKFFGTG ETEMTEEEII
301: RRVWEYIKLN HLEDPANPMA I

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.