Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019378.1-P | Field mustard | cytosol | 82.34 | 87.09 |
| CDX98747 | Canola | nucleus | 82.08 | 86.58 |
| CDX94096 | Canola | nucleus | 82.86 | 85.52 |
| CDX76378 | Canola | cytosol | 74.03 | 83.58 |
| CDX79150 | Canola | nucleus | 75.84 | 83.43 |
| CDY27449 | Canola | nucleus | 69.61 | 82.72 |
| Bra013614.1-P | Field mustard | nucleus | 76.88 | 82.45 |
| Bra020851.1-P | Field mustard | nucleus | 68.57 | 82.24 |
| VIT_00s0187g00240.t01 | Wine grape | nucleus | 57.14 | 63.95 |
| VIT_00s0187g00190.t01 | Wine grape | cytosol | 57.4 | 63.69 |
| KRH51159 | Soybean | cytosol | 53.25 | 61.75 |
| KRH01994 | Soybean | cytosol | 52.47 | 61.4 |
| Solyc11g012290.1.1 | Tomato | cytosol | 50.91 | 54.6 |
| PGSC0003DMT400034549 | Potato | cytosol | 51.43 | 54.55 |
| TraesCS7D01G242300.1 | Wheat | plastid | 32.47 | 52.74 |
| GSMUA_Achr1P19520_001 | Banana | cytosol | 43.9 | 45.8 |
| GSMUA_Achr3P11900_001 | Banana | cytosol | 42.86 | 45.21 |
| HORVU7Hr1G049900.8 | Barley | cytosol, nucleus, plastid | 36.36 | 41.54 |
| Os08t0502800-01 | Rice | nucleus | 42.86 | 40.64 |
| Os04t0665500-01 | Rice | cytosol | 38.96 | 38.76 |
| KXG25652 | Sorghum | nucleus | 42.86 | 38.55 |
| KXG27277 | Sorghum | cytosol | 39.22 | 38.23 |
| TraesCS7A01G243700.1 | Wheat | cytosol | 41.04 | 37.8 |
| Zm00001d052873_P001 | Maize | cytosol | 41.56 | 37.65 |
| HORVU2Hr1G109030.1 | Barley | cytosol | 39.74 | 37.32 |
| TraesCS2A01G488300.1 | Wheat | cytosol | 40.0 | 37.11 |
| TraesCS2D01G488600.1 | Wheat | cytosol | 39.74 | 36.78 |
| TraesCS2B01G515900.1 | Wheat | plastid | 33.25 | 36.06 |
| Zm00001d026541_P001 | Maize | cytosol | 36.62 | 35.97 |
| Zm00001d001937_P003 | Maize | cytosol | 39.22 | 35.12 |
| AT2G35605.1 | Thale cress | mitochondrion | 9.09 | 32.11 |
| AT2G14880.1 | Thale cress | plastid | 11.69 | 31.91 |
| AT4G34290.1 | Thale cress | plastid | 11.17 | 29.86 |
| AT1G31760.1 | Thale cress | mitochondrion | 8.57 | 29.46 |
| AT3G03590.1 | Thale cress | mitochondrion, plastid | 9.09 | 24.48 |
| AT3G19080.4 | Thale cress | nucleus | 29.35 | 24.35 |
| AT1G49520.1 | Thale cress | nucleus | 22.86 | 23.66 |
Protein Annotations
| Gene3D:1.10.245.10 | MapMan:35.2 | EntrezGene:828331 | ProteinID:AEE84600.1 | ArrayExpress:AT4G22360 | EnsemblPlantsGene:AT4G22360 |
| RefSeq:AT4G22360 | TAIR:AT4G22360 | RefSeq:AT4G22360-TAIR-G | EnsemblPlants:AT4G22360.1 | TAIR:AT4G22360.1 | EMBL:AY059797 |
| EMBL:AY091266 | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR036885 |
| RefSeq:NP_567661.1 | PFAM:PF02201 | PFAM:PF08766 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR13844 | PANTHER:PTHR13844:SF37 | UniProt:Q93YR5 | SMART:SM00151 | SUPFAM:SSF109715 | SUPFAM:SSF47592 |
| InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | UniParc:UPI000009EE24 | SEG:seg | : |
Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
Coordinates
chr4:+:11807257..11810117
Molecular Weight (calculated)
42719.7 Da
IEP (calculated)
7.681
GRAVY (calculated)
-0.589
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.