Factsheet for Zm00001d001937_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27277	Sorghum	cytosol	83.26	90.63
Zm00001d026541_P001	Maize	cytosol	78.37	85.97
Os04t0665500-01	Rice	cytosol	69.53	77.26
TraesCS2A01G488300.1	Wheat	cytosol	69.07	71.57
TraesCS2D01G488600.1	Wheat	cytosol	68.6	70.91
TraesCS2B01G515900.1	Wheat	plastid	58.14	70.42
HORVU2Hr1G109030.1	Barley	cytosol	66.98	70.24
GSMUA_Achr1P19520_001	Banana	cytosol	46.74	54.47
GSMUA_Achr3P11900_001	Banana	cytosol	43.95	51.78
VIT_00s0187g00240.t01	Wine grape	nucleus	38.6	48.26
VIT_00s0187g00190.t01	Wine grape	cytosol	38.6	47.84
VIT_19s0090g01460.t01	Wine grape	cytosol	36.74	47.73
KRH01994	Soybean	cytosol	35.35	46.2
KRH51159	Soybean	cytosol	35.35	45.78
CDY27449	Canola	nucleus	34.42	45.68
KRH46275	Soybean	cytosol	34.65	45.15
Solyc11g012290.1.1	Tomato	cytosol	36.05	43.18
CDX76378	Canola	cytosol	33.95	42.82
PGSC0003DMT400034549	Potato	cytosol	36.05	42.7
CDX98747	Canola	nucleus	36.05	42.47
CDX79150	Canola	nucleus	34.19	42.0
Bra019378.1-P	Field mustard	cytosol	35.35	41.76
Zm00001d052873_P001	Maize	cytosol	40.47	40.94
Bra020851.1-P	Field mustard	nucleus	30.47	40.81
Bra013614.1-P	Field mustard	nucleus	33.95	40.67
CDX94096	Canola	nucleus	35.12	40.48
AT4G22360.1	Thale cress	nucleus	35.12	39.22
Zm00001d034159_P002	Maize	cytosol	19.77	32.69
Zm00001d013221_P001	Maize	plastid	8.84	26.21
Zm00001d013204_P001	Maize	nucleus	22.79	25.52
Zm00001d035321_P001	Maize	plastid	8.37	25.17
Zm00001d053979_P001	Maize	mitochondrion	7.21	23.13
Zm00001d015127_P001	Maize	mitochondrion	6.28	22.69

Protein Annotations

Gene3D:1.10.245.10	EntrezGene:103645800	MapMan:35.2	UniProt:A0A1D6DUN5	InterPro:DEK_C	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	ProteinID:ONM12526.1	PFAM:PF02201	PFAM:PF08766
PANTHER:PTHR13844	PANTHER:PTHR13844:SF19	SMART:SM00151	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain
InterPro:SWIB_domain	UniParc:UPI000845121E	EnsemblPlantsGene:Zm00001d001937	EnsemblPlants:Zm00001d001937_P003	EnsemblPlants:Zm00001d001937_T003	SEG:seg

Description

SWIB complex BAF60b domain-containing protein

Coordinates

chr2:-:3119830..3123912

Molecular Weight (calculated)

46254.7 Da

IEP (calculated)

6.345

GRAVY (calculated)

-0.179

Length

430 amino acids

Sequence
(BLAST)

001: MVSDQEIASC VESVLRGSAG GPGEASLAAV LQQAEATLGV DLSHKAGFIR DQMDLFFGPR LQPQPPSKPQ PAPSPPQAVV APAAAVPQPH VLPQVQAHAQ
101: AQQMQPQQLA PLQPQLIFQT IPQLSAMAPV PAVSAPPAVP AMAFYPPPPL AFRYTTGLAG AATGGTVSFQ QPTPGAGGTA SPTAAPQVAG DNKESASKRK
201: RGGPGGLNKI CAISPELQTI VGETAMSRTQ IVKQLWAYIR QNNLQDPDDK RKIICNDELR VVFETDTTDM FKMNKLLAKH ITPLDPILEY AQVLPNDTAE
301: DQLHEVKRMK APTVVPQPPP INQPSVVISD ALAKFIGTDG TFPQDDALKY LWDYIKANQL ENNHTMCSGF LLQVCSEYHH LKCKFTVPFL EDVISGSILC
401: DSKLQELFGC ESIPMSGLSE MLGHHFIKKT

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.