Factsheet for TraesCS2D01G488600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G488300.1	Wheat	cytosol	95.91	96.14
TraesCS2B01G515900.1	Wheat	plastid	81.73	95.77
HORVU2Hr1G109030.1	Barley	cytosol	92.31	93.66
Os04t0665500-01	Rice	cytosol	69.47	74.68
KXG27277	Sorghum	cytosol	70.43	74.18
Zm00001d026541_P001	Maize	cytosol	66.35	70.41
Zm00001d001937_P003	Maize	cytosol	70.91	68.6
GSMUA_Achr1P19520_001	Banana	cytosol	47.84	53.93
GSMUA_Achr3P11900_001	Banana	cytosol	45.91	52.33
TraesCS7D01G242300.1	Wheat	plastid	29.81	52.32
VIT_00s0187g00240.t01	Wine grape	nucleus	40.14	48.55
VIT_00s0187g00190.t01	Wine grape	cytosol	39.9	47.84
VIT_19s0090g01460.t01	Wine grape	cytosol	37.5	47.13
KRH51159	Soybean	cytosol	37.02	46.39
CDY27449	Canola	nucleus	35.82	45.99
KRH01994	Soybean	cytosol	36.3	45.9
KRH46275	Soybean	cytosol	35.1	44.24
CDX76378	Canola	cytosol	35.34	43.11
CDX98747	Canola	nucleus	37.5	42.74
Bra020851.1-P	Field mustard	nucleus	32.93	42.68
Solyc11g012290.1.1	Tomato	cytosol	36.78	42.62
PGSC0003DMT400034549	Potato	cytosol	37.02	42.42
Bra019378.1-P	Field mustard	cytosol	37.02	42.31
CDX79150	Canola	nucleus	35.1	41.71
Bra013614.1-P	Field mustard	nucleus	35.34	40.95
CDX94096	Canola	nucleus	36.54	40.75
AT4G22360.1	Thale cress	nucleus	36.78	39.74
TraesCS5D01G411700.1	Wheat	nucleus	25.72	31.47
TraesCS5D01G115900.1	Wheat	plastid	10.1	27.45
TraesCS5D01G408400.1	Wheat	plastid	8.89	26.62

Protein Annotations

EnsemblPlants:TraesCS2D01G488600.1	EnsemblPlantsGene:TraesCS2D01G488600	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF19
PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	MapMan:35.2	:

Description

No Description!

Coordinates

chr2D:-:588122239..588125354

Molecular Weight (calculated)

44126.9 Da

IEP (calculated)

6.361

GRAVY (calculated)

-0.245

Length

416 amino acids

Sequence
(BLAST)

001: MVSDQEIAAC VESLLRGALE AGGGGAGEAA SLAAVLQQAQ ARLGVDLSHK APYIRDQMDL FFGPRLQPPP PPPPPPKAQN QNQNPPPLPA SAPAPAPAMT
101: QAMPQPQLPL EVQQQQQQML QMQQQFAAIQ PQFVFQTMPQ LPPVVSGGAA AANNAVAVSA PPPAVPAMAF YPPPPLAFRY ANALGGVATG GTVSFQQPAP
201: GVGAITSPTA APQAVGDNKE SASKRKRGGP GGLNKVCAIS PELQTVVGET AMSRTQIVKQ LWAYIRQNNL QDPDDKRKII CNDELRIVFG TDSTDMFKMN
301: KLLAKHITPL DPKDQPSEAK KVKAATAAPQ QMPTINQNQP YVVVSDALAK FLGVEGTVPH DDALKYLWDY IKANQLEDPA SASILCDSSL QELFGCESIP
401: ASGLSDLLAH HFIQRT

Best Arabidopsis Sequence Match ( AT3G19080.1 )
(BLAST)

001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDSEEP NEKDKKQKKE VLAPLPLSDA LVKFLGDGEN
401: SLSRADVVKR LWEYINHNDL QDPSDKRRVI CDEKLKELFE VDSFEDTSVS KLLTNHFIKA EQ

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.