Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019378.1-P | Field mustard | cytosol | 93.57 | 95.88 |
| CDX98747 | Canola | nucleus | 91.69 | 93.7 |
| CDX76378 | Canola | cytosol | 78.55 | 85.92 |
| CDY27449 | Canola | nucleus | 74.53 | 85.8 |
| CDX79150 | Canola | nucleus | 78.55 | 83.71 |
| AT4G22360.1 | Thale cress | nucleus | 85.52 | 82.86 |
| VIT_00s0187g00240.t01 | Wine grape | nucleus | 58.71 | 63.66 |
| VIT_00s0187g00190.t01 | Wine grape | cytosol | 58.45 | 62.82 |
| KRH01994 | Soybean | cytosol | 55.23 | 62.61 |
| KRH51159 | Soybean | cytosol | 54.69 | 61.45 |
| Solyc11g012290.1.1 | Tomato | cytosol | 51.47 | 53.48 |
| PGSC0003DMT400034549 | Potato | cytosol | 51.74 | 53.17 |
| TraesCS7D01G242300.1 | Wheat | plastid | 32.17 | 50.63 |
| GSMUA_Achr1P19520_001 | Banana | cytosol | 45.31 | 45.8 |
| GSMUA_Achr3P11900_001 | Banana | cytosol | 44.24 | 45.21 |
| HORVU7Hr1G049900.8 | Barley | cytosol, nucleus, plastid | 35.39 | 39.17 |
| Os08t0502800-01 | Rice | nucleus | 42.63 | 39.16 |
| Os04t0665500-01 | Rice | cytosol | 39.95 | 38.5 |
| KXG27277 | Sorghum | cytosol | 40.75 | 38.48 |
| Zm00001d052873_P001 | Maize | cytosol | 42.9 | 37.65 |
| KXG25652 | Sorghum | nucleus | 43.16 | 37.62 |
| CDX76269 | Canola | cytosol | 8.85 | 37.5 |
| TraesCS2A01G488300.1 | Wheat | cytosol | 41.02 | 36.87 |
| TraesCS7A01G243700.1 | Wheat | cytosol | 41.29 | 36.84 |
| HORVU2Hr1G109030.1 | Barley | cytosol | 40.48 | 36.83 |
| Zm00001d026541_P001 | Maize | cytosol | 38.61 | 36.73 |
| TraesCS2D01G488600.1 | Wheat | cytosol | 40.75 | 36.54 |
| TraesCS2B01G515900.1 | Wheat | plastid | 33.78 | 35.49 |
| Zm00001d001937_P003 | Maize | cytosol | 40.48 | 35.12 |
| CDX75421 | Canola | plastid | 12.6 | 34.06 |
| CDY45303 | Canola | plastid | 12.6 | 33.33 |
| CDX72477 | Canola | plastid | 12.33 | 33.09 |
| CDY69869 | Canola | plastid | 12.06 | 32.85 |
| CDY12300 | Canola | mitochondrion | 8.04 | 32.26 |
| CDY49157 | Canola | mitochondrion | 7.77 | 31.18 |
| CDY47689 | Canola | mitochondrion | 9.38 | 29.91 |
| CDY50950 | Canola | mitochondrion | 9.12 | 29.31 |
| CDY51761 | Canola | mitochondrion | 9.65 | 26.87 |
| CDX92300 | Canola | nucleus | 30.29 | 25.0 |
| CDX99270 | Canola | nucleus | 30.29 | 24.35 |
| CDY50651 | Canola | plastid | 9.38 | 23.97 |
Protein Annotations
| Gene3D:1.10.245.10 | MapMan:35.2 | GO:A0A078DXZ2 | EnsemblPlants:CDX94096 | ProteinID:CDX94096 | ProteinID:CDX94096.1 |
| InterPro:DEK_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00157004001 | InterPro:IPR036885 |
| PFAM:PF02201 | PFAM:PF08766 | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF37 | SMART:SM00151 | SUPFAM:SSF109715 |
| SUPFAM:SSF47592 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | UniParc:UPI0004EF3EEA | SEG:seg |
Description
BnaC07g37300D
Coordinates
chrLK031879:+:643853..646116
Molecular Weight (calculated)
41534.4 Da
IEP (calculated)
7.662
GRAVY (calculated)
-0.594
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDQDLARG VETLLRQSDP SSLTSLTSVV QQLEAKLGLD LTEKTSFIRD QINLLLRPHQ PIFSSSSSSS SASASTAQPP PLPSQQLHFG VNVPGKGHFA
101: LQHPSQFSAS HSQQYPHFAL QPPPPPPYHS YDLNFRQPYP PYMPPHQHQH NQLQSPRQGP SVLVSQAPKE SVPPAGTKRK GGPGGLNKVC RVSPELEVVV
201: GEPALPRTEI VRQLWAYIRK NNLQDPSNKR KIICDDALRV VFETDCTDMF KMNKLLAKHI LPLDPSKDSG QAKRAKAEVE TKTETETTEP VSSSSTVALS
301: EPLARFFGTG ETEMKDEEII RRVWEYIKLN NLEDPENPMA IQCNEKLRDL LGCESISAVG INEMLRRHMY KPS
101: LQHPSQFSAS HSQQYPHFAL QPPPPPPYHS YDLNFRQPYP PYMPPHQHQH NQLQSPRQGP SVLVSQAPKE SVPPAGTKRK GGPGGLNKVC RVSPELEVVV
201: GEPALPRTEI VRQLWAYIRK NNLQDPSNKR KIICDDALRV VFETDCTDMF KMNKLLAKHI LPLDPSKDSG QAKRAKAEVE TKTETETTEP VSSSSTVALS
301: EPLARFFGTG ETEMKDEEII RRVWEYIKLN NLEDPENPMA IQCNEKLRDL LGCESISAVG INEMLRRHMY KPS
001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.