CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031985.1-P	Field mustard	mitochondrion	91.1	86.93
CDY51761	Canola	mitochondrion	79.45	86.57
AT3G03590.1	Thale cress	mitochondrion, plastid	74.66	76.22
GSMUA_AchrUn_...	Banana	cytosol	26.03	54.29
VIT_15s0024g00650.t01	Wine grape	mitochondrion	47.26	53.91
PGSC0003DMT400004968	Potato	plastid	42.47	50.0
CDY49157	Canola	mitochondrion	31.51	49.46
CDY12300	Canola	mitochondrion	31.51	49.46
GSMUA_Achr7P17340_001	Banana	mitochondrion	43.84	49.23
Solyc08g075400.2.1	Tomato	plastid	41.78	49.19
VIT_02s0087g00810.t01	Wine grape	mitochondrion	38.36	48.7
CDX76269	Canola	cytosol	28.77	47.73
TraesCS6B01G116900.1	Wheat	plastid	45.89	46.85
TraesCS6A01G084700.1	Wheat	cytosol, mitochondrion, plastid	46.58	46.58
TraesCSU01G113700.1	Wheat	plastid	45.21	45.83
Os02t0130000-01	Rice	mitochondrion, plastid	41.1	45.8
Zm00001d015127_P001	Maize	mitochondrion	36.3	44.54
CDY50950	Canola	mitochondrion	34.93	43.97
CDY47689	Canola	mitochondrion	34.93	43.59
Zm00001d053979_P001	Maize	mitochondrion	36.99	40.3
EES06225	Sorghum	mitochondrion	35.62	39.69
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	32.88	36.92
CDY69869	Canola	plastid	32.88	35.04
CDX75421	Canola	plastid	32.88	34.78
CDY45303	Canola	plastid	32.88	34.04
CDX72477	Canola	plastid	32.19	33.81
HORVU6Hr1G015440.1	Barley	plastid	43.15	30.29
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	32.88	23.65
CDX76378	Canola	cytosol	25.34	10.85
CDY27449	Canola	nucleus	23.97	10.8
CDX79150	Canola	nucleus	25.34	10.57
CDX98747	Canola	nucleus	24.66	9.86
CDX94096	Canola	nucleus	23.97	9.38
CDX92300	Canola	nucleus	25.34	8.19
CDX99270	Canola	nucleus	24.66	7.76

Protein Annotations

EnsemblPlants:CDY50651	EnsemblPlantsGene:GSBRNA2T00097207001	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8
PFAM:PF02201	ProteinID:CDY50651	ProteinID:CDY50651.1	SEG:seg	SMART:SM00151	SUPFAM:SSF47592
UniParc:UPI0004EDC60F	UniProt:A0A078IKV5	MapMan:35.2	:	:	:

Description

BnaC05g48150DBnaC05g48150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKV5]

Coordinates

chrLK032929:-:13148..14289

Molecular Weight (calculated)

15693.9 Da

IEP (calculated)

11.002

GRAVY (calculated)

-0.459

Length

146 amino acids

Sequence
(BLAST)

001: MSSLAARVFR SLLAPASRAA TSSSRSASTV AAGGTKKSAA KPKAKPKPKP KPDSLAKKKT PRTTGIFKAT TVSPALAQFL GTGETTRTDA VKEVWTYVKS
101: HDLQNPADKR EIFCDEKLKQ IFEGKDKVGF LEVTKLLSTH FVKTTA

Best Arabidopsis Sequence Match ( AT3G03590.1 )
(BLAST)

001: MSSVAAMVFR GARSLLAPAS RATSSLVSAG STKKPAAKPK AKAKPKPKAK SDSPAKKTPR STGIFKVTPV SPVLAQFLGT GETSRTDAIK GIWTYIKSHD
101: LQNPADKREI FCDETLKLIF EGKDKVGFLE ISKLLSPHFV KTA

Arabidopsis Description

At3g03590 [Source:UniProtKB/TrEMBL;Acc:Q9SS61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.