Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92300 | Canola | nucleus | 93.32 | 95.8 |
| AT3G19080.4 | Thale cress | nucleus | 77.16 | 77.16 |
| GSMUA_Achr2P13370_001 | Banana | cytosol | 7.76 | 56.25 |
| GSMUA_Achr4P28200_001 | Banana | nucleus | 37.5 | 55.06 |
| KRH76945 | Soybean | nucleus | 39.01 | 53.71 |
| EER93399 | Sorghum | nucleus | 36.85 | 52.45 |
| KRH28515 | Soybean | nucleus | 39.01 | 52.31 |
| VIT_07s0197g00070.t01 | Wine grape | nucleus | 32.76 | 51.01 |
| TraesCS5D01G411700.1 | Wheat | nucleus | 36.21 | 49.41 |
| TraesCS5A01G401500.2 | Wheat | nucleus | 36.21 | 49.12 |
| PGSC0003DMT400001975 | Potato | nucleus | 30.17 | 47.3 |
| VIT_03s0063g01070.t01 | Wine grape | nucleus | 12.72 | 47.2 |
| TraesCS5B01G406200.2 | Wheat | nucleus | 36.42 | 46.43 |
| Solyc02g065160.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 28.45 | 46.32 |
| Zm00001d034159_P002 | Maize | cytosol | 25.86 | 46.15 |
| Zm00001d013204_P001 | Maize | nucleus | 33.41 | 40.36 |
| HORVU5Hr1G097590.1 | Barley | nucleus | 29.53 | 38.38 |
| CDY27449 | Canola | nucleus | 25.22 | 36.11 |
| CDX76378 | Canola | cytosol | 25.22 | 34.31 |
| CDX76269 | Canola | cytosol | 6.25 | 32.95 |
| CDX79150 | Canola | nucleus | 24.57 | 32.57 |
| CDX98747 | Canola | nucleus | 24.78 | 31.51 |
| CDX94096 | Canola | nucleus | 24.35 | 30.29 |
| CDY49157 | Canola | mitochondrion | 5.6 | 27.96 |
| CDY12300 | Canola | mitochondrion | 5.6 | 27.96 |
| Os03t0764450-00 | Rice | nucleus | 28.45 | 27.79 |
| CDY50950 | Canola | mitochondrion | 6.9 | 27.59 |
| CDY47689 | Canola | mitochondrion | 6.9 | 27.35 |
| CDY69869 | Canola | plastid | 7.54 | 25.55 |
| CDX75421 | Canola | plastid | 7.54 | 25.36 |
| CDY50651 | Canola | plastid | 7.76 | 24.66 |
| CDY51761 | Canola | mitochondrion | 6.9 | 23.88 |
| CDX72477 | Canola | plastid | 7.11 | 23.74 |
| CDY45303 | Canola | plastid | 7.11 | 23.4 |
Protein Annotations
| Gene3D:1.10.10.60 | Gene3D:1.10.245.10 | MapMan:35.2 | GO:A0A078EAY5 | EnsemblPlants:CDX99270 | ProteinID:CDX99270 |
| ProteinID:CDX99270.1 | ncoils:Coil | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00107520001 | InterPro:IPR036885 | PFAM:PF02201 | PFAM:PF08766 | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF23 |
| SMART:SM00151 | SUPFAM:SSF109715 | SUPFAM:SSF47592 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain |
| UniParc:UPI0004EE5496 | SEG:seg | : | : | : | : |
Description
BnaC05g33850D
Coordinates
chrLK031909:-:701660..704454
Molecular Weight (calculated)
52512.1 Da
IEP (calculated)
4.802
GRAVY (calculated)
-0.834
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSDSDLVTR LREILSSSDL ETTTPATVRR QLEADFGVEL TDKKAFIRDQ IDAFLESNGG GEENPVSPKA EEDADEMTKD GDEEKEERIE FKGIKEKRLA
101: LFLPVKAKKR GGGGFAKVCQ LSPQLEKFIG TSQLARTEVV KKMWAYIKEK DLQDPKDRRK ILCDESLHSL FHVKAINMFQ MNKALAKHIW PLGDGGDGCV
201: TSVKEEEDEG DASEERDEKG DKTEEMEEDD EEEVRNLRKR KRKKPAKSEE KPKRKGGGGF AKVCSLSPEL QAFTGMTKLA RTEVVKMLWK YIKENNLQDP
301: KDGRTIICDE SLRSLFPLES INMFQMNKHL TKHIWPLEDN AGESGGSSSP KNGKLKMETE DGDTESDELN ENDEKPKKEG CGLLAPLPLS DALIKFLGDG
401: ESSLSRADVV KRLWEYIEQN DLQDPSDKKR IICDEKLKEL FEVDSFEDIS VSKLLTSHYI KIEQ
101: LFLPVKAKKR GGGGFAKVCQ LSPQLEKFIG TSQLARTEVV KKMWAYIKEK DLQDPKDRRK ILCDESLHSL FHVKAINMFQ MNKALAKHIW PLGDGGDGCV
201: TSVKEEEDEG DASEERDEKG DKTEEMEEDD EEEVRNLRKR KRKKPAKSEE KPKRKGGGGF AKVCSLSPEL QAFTGMTKLA RTEVVKMLWK YIKENNLQDP
301: KDGRTIICDE SLRSLFPLES INMFQMNKHL TKHIWPLEDN AGESGGSSSP KNGKLKMETE DGDTESDELN ENDEKPKKEG CGLLAPLPLS DALIKFLGDG
401: ESSLSRADVV KRLWEYIEQN DLQDPSDKKR IICDEKLKEL FEVDSFEDIS VSKLLTSHYI KIEQ
001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQDPSDKRR VICDEKLKEL FEVDSFEDTS VSKLLTNHFI KAEQ
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQDPSDKRR VICDEKLKEL FEVDSFEDTS VSKLLTNHFI KAEQ
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.