Factsheet for PGSC0003DMT400001975

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g065160.1.1	Tomato	cytoskeleton, cytosol, nucleus	65.54	68.07
TraesCS5A01G401500.2	Wheat	nucleus	48.65	42.11
TraesCS5D01G411700.1	Wheat	nucleus	47.64	41.47
EER93399	Sorghum	nucleus	45.61	41.41
PGSC0003DMT400066349	Potato	cytosol	44.93	39.58
TraesCS5B01G406200.2	Wheat	nucleus	47.64	38.74
Zm00001d013204_P001	Maize	nucleus	45.27	34.9
Zm00001d034159_P002	Maize	cytosol	29.73	33.85
PGSC0003DMT400047544	Potato	plastid	12.84	31.15
Bra022384.1-P	Field mustard	nucleus	47.3	31.04
CDX92300	Canola	nucleus	46.96	30.75
AT3G19080.4	Thale cress	nucleus	47.3	30.17
CDX99270	Canola	nucleus	47.3	30.17
HORVU5Hr1G097590.1	Barley	nucleus	35.47	29.41
AT1G49520.1	Thale cress	nucleus	36.82	29.3
PGSC0003DMT400004968	Potato	plastid	11.15	26.61
PGSC0003DMT400025339	Potato	plastid	11.82	25.55
PGSC0003DMT400059663	Potato	plastid	11.49	24.64
PGSC0003DMT400066526	Potato	plastid	11.49	23.45
PGSC0003DMT400034549	Potato	cytosol	27.36	22.31
Os03t0764450-00	Rice	nucleus	35.14	21.89

Protein Annotations

Gene3D:1.10.245.10	MapMan:35.2	ncoils:Coil	InterPro:DEK_C	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	UniProt:M0ZJF0	PFAM:PF02201	PFAM:PF08766	EnsemblPlantsGene:PGSC0003DMG400000750
PGSC:PGSC0003DMG400000750	EnsemblPlants:PGSC0003DMT400001975	PANTHER:PTHR13844	PANTHER:PTHR13844:SF23	SMART:SM00151	SUPFAM:SSF109715
SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI000295DE31	SEG:seg

Description

SWIB/MDM2 domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000750]

Coordinates

chr2:-:23772360..23777049

Molecular Weight (calculated)

33910.2 Da

IEP (calculated)

4.531

GRAVY (calculated)

-1.145

Length

296 amino acids

Sequence
(BLAST)

001: MVSDSELVDR LREFLSTSDL NITTNTDVRR KLEEDFNIDL SDRKVFIREQ IDLYLESHYQ VNQENENNEE EMEEENDQGP SAEVKSQVSE EEEDPKEEEE
101: EEDPEEEEEE ESEAVAKVKR KSSKKKPGKK NESGKRKTGG FTKLCSLSPQ LQKITGEAEL ARTEVVKRMW HYINENDLKN PSDKRIINCD DTLRELFGVD
201: TIGMFEMNKA LTKHIWPLDS DGVSTITTSG SVNSTANKKR RKQEEDEDSD EPKKEEKKNS GMHAALRLSN ALINFLGTGE SELSRPNVVK KKLGIH

Best Arabidopsis Sequence Match ( AT3G19080.1 )
(BLAST)

001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDSEEP NEKDKKQKKE VLAPLPLSDA LVKFLGDGEN
401: SLSRADVVKR LWEYINHNDL QDPSDKRRVI CDEKLKELFE VDSFEDTSVS KLLTNHFIKA EQ

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.