Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytoskeleton, cytosol, nucleus
Any Predictor:cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400001975 Potato nucleus 68.07 65.54
TraesCS5A01G401500.2 Wheat nucleus 47.02 39.18
TraesCS5D01G411700.1 Wheat nucleus 46.32 38.82
EER93399 Sorghum nucleus 44.21 38.65
Solyc01g108290.2.1 Tomato nucleus 44.91 38.44
TraesCS5B01G406200.2 Wheat nucleus 45.96 35.99
Zm00001d034159_P002 Maize cytosol 30.18 33.08
Solyc08g005590.2.1 Tomato nucleus 12.63 29.51
Zm00001d013204_P001 Maize nucleus 39.3 29.17
Bra022384.1-P Field mustard nucleus 45.61 28.82
AT1G49520.1 Thale cress nucleus 37.54 28.76
CDX92300 Canola nucleus 45.61 28.76
AT3G19080.4 Thale cress nucleus 46.32 28.45
CDX99270 Canola nucleus 46.32 28.45
HORVU5Hr1G097590.1 Barley nucleus 34.74 27.73
Solyc01g107330.2.1 Tomato plastid 11.58 22.6
Solyc08g075400.2.1 Tomato plastid 9.82 22.58
Solyc11g012290.1.1 Tomato cytosol 27.02 21.45
Os03t0764450-00 Rice nucleus 33.68 20.21
Protein Annotations
EnsemblPlants:Solyc02g065160.1.1EnsemblPlantsGene:Solyc02g065160.1Gene3D:1.10.10.60Gene3D:1.10.245.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:DEK_CInterPro:IPR036885InterPro:SWIB_MDM2_dom_sfInterPro:SWIB_MDM2_domainInterPro:SWIB_domain
PANTHER:PTHR13844PANTHER:PTHR13844:SF23PFAM:PF02201PFAM:PF08766SEG:segSMART:SM00151
SUPFAM:SSF109715SUPFAM:SSF47592UniParc:UPI0002768A1EUniProt:K4B6V1MapMan:35.2:
Description
No Description!
Coordinates
chr2:-:36317459..36323167
Molecular Weight (calculated)
33293.7 Da
IEP (calculated)
4.391
GRAVY (calculated)
-1.016
Length
285 amino acids
Sequence
(BLAST)
001: MVSDSELVDR IHEFLSTADL DTTTNNIVRR KLEEDFNIDL SDRKVFIREQ IDLYLESYYQ INQEQMEVEN DQEEDPEEDE EEEDPEEEED LEESKAVDKA
101: EGKSSEKKPG KKNESGKRKA GGFTKICSLS PQLQKITGEA ELARTEVVKR MWQYINANEL KNPSDKRIIN CDDTLRELFG VESINMFAMN KALTKHIWPL
201: DSDAANKKQR KQEEDEDLDE PKKEEQQKNS GMHDPSDERR VICDEKLKEV FHVETHRGIG VTKLLSPHFI WFGENLDSFR ILFYV
Best Arabidopsis Sequence Match ( AT3G19080.2 )
(BLAST)
001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQVCHLLST LCFFLLTCFF TPFS
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.