Factsheet for HORVU5Hr1G097590.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G411700.1	Wheat	nucleus	69.19	72.65
TraesCS5A01G401500.2	Wheat	nucleus	68.07	71.05
Zm00001d034159_P002	Maize	cytosol	51.26	70.38
TraesCS5B01G406200.2	Wheat	nucleus	68.63	67.31
EER93399	Sorghum	nucleus	57.98	63.5
GSMUA_Achr2P13370_001	Banana	cytosol	9.8	54.69
GSMUA_Achr4P28200_001	Banana	nucleus	41.74	47.15
Zm00001d013204_P001	Maize	nucleus	50.42	46.88
KRH76945	Soybean	nucleus	43.7	46.29
KRH28515	Soybean	nucleus	44.82	46.24
VIT_03s0063g01070.t01	Wine grape	nucleus	15.97	45.6
Os03t0764450-00	Rice	nucleus	57.98	43.58
VIT_07s0197g00070.t01	Wine grape	nucleus	33.33	39.93
PGSC0003DMT400001975	Potato	nucleus	29.41	35.47
Solyc02g065160.1.1	Tomato	cytoskeleton, cytosol, nucleus	27.73	34.74
AT3G19080.4	Thale cress	nucleus	40.34	31.03
Bra022384.1-P	Field mustard	nucleus	38.38	30.38
CDX92300	Canola	nucleus	38.38	30.31
CDX99270	Canola	nucleus	38.38	29.53
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	27.17	28.78
HORVU5Hr1G028290.1	Barley	plastid	11.76	27.45
AT1G49520.1	Thale cress	nucleus	24.37	23.39
HORVU2Hr1G109030.1	Barley	cytosol	26.05	22.68
HORVU6Hr1G015440.1	Barley	plastid	10.36	17.79

Protein Annotations

EnsemblPlants:HORVU5Hr1G097590.1	EnsemblPlantsGene:HORVU5Hr1G097590	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	ncoils:Coil	PANTHER:PTHR13844
PANTHER:PTHR13844:SF23	PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI000B47C121
UniProt:A0A287SFM7	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:604835220..604840422

Molecular Weight (calculated)

40182.6 Da

IEP (calculated)

10.584

GRAVY (calculated)

-1.092

Length

357 amino acids

Sequence
(BLAST)

001: PTPPVPCPAL PPCTATLPSP PERHRERERE RERRENQPEA RRRWCRTRSW WSGCGRGCGT RTSPPPPPAP CAAASRRTSA STSPTRRPSS GSRSTSCSPS
101: SPTRPSPRMR PRRRRIRGRE EEEEEEDEEE EDEESGAGRK KKRRLGDGKK KAGGFTKLCS ISPALQEFVG ASECARTEVV KKLWAYIREN NLQDPSNRRK
201: ILCDENLKKI FNVNSIDMFQ MNKALTKHIW PLDSDGPVSP KKSTPKEKST PKAKPQKRDR SEGNKQKGGS SGSTSGLLAP LLLSDDLAKF IGTGESMLSR
301: SDVVKRMWVY IKENNLQDPS DRRKIICDEK LKDLFQVESF TGFTVSKLLT PHFTKAK

Best Arabidopsis Sequence Match ( AT3G19080.1 )
(BLAST)

001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDSEEP NEKDKKQKKE VLAPLPLSDA LVKFLGDGEN
401: SLSRADVVKR LWEYINHNDL QDPSDKRRVI CDEKLKELFE VDSFEDTSVS KLLTNHFIKA EQ

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.