Factsheet for TraesCS5B01G406200.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G401500.2	Wheat	nucleus	92.03	97.95
TraesCS5D01G411700.1	Wheat	nucleus	91.48	97.94
EER93399	Sorghum	nucleus	70.6	78.83
Zm00001d034159_P002	Maize	cytosol	51.37	71.92
HORVU5Hr1G097590.1	Barley	nucleus	67.31	68.63
GSMUA_Achr4P28200_001	Banana	nucleus	53.57	61.71
GSMUA_Achr2P13370_001	Banana	cytosol	10.44	59.38
Zm00001d013204_P001	Maize	nucleus	62.36	59.11
KRH76945	Soybean	nucleus	53.02	57.27
KRH28515	Soybean	nucleus	53.85	56.65
VIT_07s0197g00070.t01	Wine grape	nucleus	43.96	53.69
VIT_03s0063g01070.t01	Wine grape	nucleus	16.76	48.8
PGSC0003DMT400001975	Potato	nucleus	38.74	47.64
Solyc02g065160.1.1	Tomato	cytoskeleton, cytosol, nucleus	35.99	45.96
Os03t0764450-00	Rice	nucleus	55.77	42.74
CDX92300	Canola	nucleus	46.7	37.61
Bra022384.1-P	Field mustard	nucleus	46.43	37.47
AT3G19080.4	Thale cress	nucleus	47.25	37.07
CDX99270	Canola	nucleus	46.43	36.42
AT1G49520.1	Thale cress	nucleus	31.87	31.18
TraesCS5B01G108300.1	Wheat	plastid	11.81	28.1
TraesCS6B01G116900.1	Wheat	plastid	10.71	27.27
TraesCS5B01G403900.1	Wheat	plastid	10.16	26.43
TraesCS2B01G515900.1	Wheat	plastid	24.18	24.79

Protein Annotations

EnsemblPlants:TraesCS5B01G406200.2	EnsemblPlantsGene:TraesCS5B01G406200	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DEK_C	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	ncoils:Coil
PANTHER:PTHR13844	PANTHER:PTHR13844:SF23	PFAM:PF02201	PFAM:PF08766	SEG:seg	SMART:SM00151
SUPFAM:SSF109715	SUPFAM:SSF47592	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5B:+:582390393..582395780

Molecular Weight (calculated)

40900.7 Da

IEP (calculated)

4.606

GRAVY (calculated)

-0.956

Length

364 amino acids

Sequence
(BLAST)

001: MVSDSELVER LREVLRESDL TTTTTGALRR RLEEDFGVDL SDKKTFVREQ VDLLLSEFAD KAEPEDAPAE EEDPEEVTPE AGEGGEEKGE GEEEGAEQQE
101: GEEEEEEEEE EEEEEDEESG GGRKKKRRIC VGTVHSRVIS LPEQWLGDGK KKAGGFTKLC SISPALQEFV GASECARTEV VKKLWAYIRE NNLQDPSNRR
201: KILCDENLKK IFNVNSIDMF QMNKALTRHI WPLDSDGPVS PKKSTPKEKS TPKEKSTPKG KPQKRDRSEG NKQKGGSSGS TSGLLAPLVL SDDLAKFIGT
301: GESMLSRSDV VKRMWDYIKE NNLQDPSDRR KIICDEKLKD LFQVESFTGF TVSKLLNPHF TKAK

Best Arabidopsis Sequence Match ( AT3G19080.1 )
(BLAST)

001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDSEEP NEKDKKQKKE VLAPLPLSDA LVKFLGDGEN
401: SLSRADVVKR LWEYINHNDL QDPSDKRRVI CDEKLKELFE VDSFEDTSVS KLLTNHFIKA EQ

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.