CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76945	Soybean	nucleus	93.06	95.55
GSMUA_Achr2P13370_001	Banana	cytosol	12.43	67.19
VIT_07s0197g00070.t01	Wine grape	nucleus	57.23	66.44
GSMUA_Achr4P28200_001	Banana	nucleus	59.25	64.87
EER93399	Sorghum	nucleus	58.96	62.58
Zm00001d034159_P002	Maize	cytosol	44.8	59.62
TraesCS5D01G411700.1	Wheat	nucleus	56.65	57.65
TraesCS5A01G401500.2	Wheat	nucleus	56.36	57.02
TraesCS5B01G406200.2	Wheat	nucleus	56.65	53.85
Zm00001d013204_P001	Maize	nucleus	51.73	46.61
HORVU5Hr1G097590.1	Barley	nucleus	46.24	44.82
Bra022384.1-P	Field mustard	nucleus	52.6	40.35
CDX92300	Canola	nucleus	52.31	40.04
CDX99270	Canola	nucleus	52.31	39.01
AT3G19080.4	Thale cress	nucleus	51.73	38.58
Os03t0764450-00	Rice	nucleus	45.66	33.26
AT1G49520.1	Thale cress	nucleus	34.39	31.99
KRH01994	Soybean	cytosol	30.06	31.61
KRH51159	Soybean	cytosol	30.06	31.33
KRH77941	Soybean	nucleus	12.14	30.22
KRH46275	Soybean	cytosol	28.61	30.0
KRH27569	Soybean	nucleus	11.85	27.7
KRH76467	Soybean	nucleus	10.4	27.27
KRH28989	Soybean	mitochondrion, plastid	10.4	27.27

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.245.10	EntrezGene:100786835	MapMan:35.2	EMBL:ACUP02006756	ncoils:Coil
InterPro:DEK_C	EnsemblPlantsGene:GLYMA_11G058700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1LHG9
InterPro:IPR036885	EnsemblPlants:KRH28515	ProteinID:KRH28515	ProteinID:KRH28515.1	PFAM:PF02201	PFAM:PF08766
PANTHER:PTHR13844	PANTHER:PTHR13844:SF23	SMART:SM00151	SUPFAM:SSF109715	SUPFAM:SSF47592	InterPro:SWIB_MDM2_dom_sf
InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	UniParc:UPI000233C814	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:4439311..4444665

Molecular Weight (calculated)

39974.6 Da

IEP (calculated)

4.822

GRAVY (calculated)

-1.113

Length

346 amino acids

Sequence
(BLAST)

001: MVSESELIGR LREFLRSSDL NTTTTATVRR QLEADFGIDL SDRKAFIREQ VDLFLQTEHN QSQQEEEEKE EKHQNDHVEE QEEDAPNNPE QSQPSDSKEV
101: TDEDEEEEDE EEEEDKPKHA KKAKKNKGRS NTLGDEVVKK RGGGFCKLCS LSPQLQEFMG APEMARTEVV KQLWAYIREK NLQDPNNRRN IICDERLRSL
201: FNVNSINMFQ MNKALSKHIW PLDSDDVVQV KSTPKEKQKK QERDDDSDEP KKKEKRQKGG GKSGFLAPLQ LSDALVNFLG TGESELARTD VIKRMWDYIK
301: GNNLQDPSDK RKIICDEKLK ELFDVDTFTG FTVTKLLAPH FIKTEQ

Best Arabidopsis Sequence Match ( AT3G19080.1 )
(BLAST)

001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDSEEP NEKDKKQKKE VLAPLPLSDA LVKFLGDGEN
401: SLSRADVVKR LWEYINHNDL QDPSDKRRVI CDEKLKELFE VDSFEDTSVS KLLTNHFIKA EQ

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.