CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27569	Soybean	nucleus	87.77	82.43
CDX76269	Canola	cytosol	39.57	62.5
CDY69869	Canola	plastid	53.24	54.01
Bra011519.1-P	Field mustard	plastid	53.24	53.62
CDX75421	Canola	plastid	53.24	53.62
AT2G14880.1	Thale cress	plastid	52.52	51.77
PGSC0003DMT400025339	Potato	plastid	50.36	51.09
CDX72477	Canola	plastid	50.36	50.36
PGSC0003DMT400059663	Potato	plastid	49.64	50.0
PGSC0003DMT400066526	Potato	plastid	51.8	49.66
Bra017644.1-P	Field mustard	plastid	50.36	49.65
CDY45303	Canola	plastid	50.36	49.65
Solyc01g107330.2.1	Tomato	plastid	51.08	48.63
AT4G34290.1	Thale cress	plastid	50.36	48.61
VIT_03s0091g00430.t01	Wine grape	plastid	50.36	48.28
GSMUA_Achr10P...	Banana	plastid	46.04	45.39
GSMUA_Achr7P26330_001	Banana	plastid	42.45	42.14
GSMUA_Achr3P30180_001	Banana	plastid	42.45	42.14
Bra034617.1-P	Field mustard	cytosol	23.74	39.29
EES17082	Sorghum	plastid	38.85	36.73
TraesCS5D01G115900.1	Wheat	plastid	40.29	36.6
TraesCS5B01G108300.1	Wheat	plastid	40.29	36.6
HORVU5Hr1G028290.1	Barley	plastid	40.29	36.6
KRH28989	Soybean	mitochondrion, plastid	34.53	36.36
KRH76467	Soybean	nucleus	34.53	36.36
TraesCS5A01G105100.1	Wheat	plastid	39.57	35.48
Zm00001d035321_P001	Maize	plastid	35.97	34.97
Os12t0507500-00	Rice	plastid	29.5	22.78
KRH01994	Soybean	cytosol	28.78	12.16
KRH28515	Soybean	nucleus	30.22	12.14
KRH46275	Soybean	cytosol	28.78	12.12
KRH51159	Soybean	cytosol	28.78	12.05
KRH76945	Soybean	nucleus	28.78	11.87

Protein Annotations

EMBL:ACUP02000686	EMBL:BT090375	EnsemblPlants:KRH77941	EnsemblPlantsGene:GLYMA_01G243300	EntrezGene:100499975	Gene3D:1.10.245.10
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain
InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8	PFAM:PF02201	ProteinID:KRH77941	ProteinID:KRH77941.1
SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI0001B15A4B	UniProt:C6SYX7	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr1:-:56621182..56622283

Molecular Weight (calculated)

15579.0 Da

IEP (calculated)

10.215

GRAVY (calculated)

-0.394

Length

139 amino acids

Sequence
(BLAST)

001: MALSSGLFLC SSSRVLPPPE THTFMRTRPS SAALRTISVS CCTVSQSSKP ARKIRGIMKP RKVSPEMEDL VGAPEMARTQ VLKRIWAYIK DNNLQDPTDK
101: RTINCDEKLK KVFAGKDQVE MLEIARLISP HFLKSESES

Best Arabidopsis Sequence Match ( AT2G14880.1 )
(BLAST)

001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.