Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28989 | Soybean | mitochondrion, plastid | 93.18 | 93.18 |
| CDY12300 | Canola | mitochondrion | 46.21 | 65.59 |
| GSMUA_AchrUn_... | Banana | cytosol | 34.09 | 64.29 |
| AT2G35605.1 | Thale cress | mitochondrion | 53.03 | 64.22 |
| CDY49157 | Canola | mitochondrion | 44.7 | 63.44 |
| Bra023201.1-P | Field mustard | mitochondrion | 52.27 | 60.0 |
| Solyc08g005590.2.1 | Tomato | nucleus | 53.79 | 58.2 |
| CDY47689 | Canola | mitochondrion | 51.52 | 58.12 |
| AT1G31760.1 | Thale cress | mitochondrion | 49.24 | 58.04 |
| Bra033879.1-P | Field mustard | mitochondrion | 50.0 | 56.9 |
| CDY50950 | Canola | mitochondrion | 50.0 | 56.9 |
| PGSC0003DMT400047544 | Potato | plastid | 52.27 | 56.56 |
| GSMUA_Achr7P17340_001 | Banana | mitochondrion | 53.03 | 53.85 |
| Os02t0130000-01 | Rice | mitochondrion, plastid | 50.76 | 51.15 |
| Zm00001d053979_P001 | Maize | mitochondrion | 46.21 | 45.52 |
| Zm00001d015127_P001 | Maize | mitochondrion | 40.91 | 45.38 |
| TraesCSU01G113700.1 | Wheat | plastid | 49.24 | 45.14 |
| TraesCS6A01G084700.1 | Wheat | cytosol, mitochondrion, plastid | 49.24 | 44.52 |
| EES06225 | Sorghum | mitochondrion | 43.94 | 44.27 |
| TraesCS6B01G116900.1 | Wheat | plastid | 46.97 | 43.36 |
| GSMUA_Achr4P05700_001 | Banana | cytosol, mitochondrion | 34.85 | 35.38 |
| KRH77941 | Soybean | nucleus | 36.36 | 34.53 |
| KRH27569 | Soybean | nucleus | 37.12 | 33.11 |
| HORVU6Hr1G015440.1 | Barley | plastid | 50.76 | 32.21 |
| GSMUA_Achr4P12450_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 36.36 | 23.65 |
| KRH46275 | Soybean | cytosol | 29.55 | 11.82 |
| KRH01994 | Soybean | cytosol | 28.79 | 11.55 |
| KRH51159 | Soybean | cytosol | 28.79 | 11.45 |
| KRH28515 | Soybean | nucleus | 27.27 | 10.4 |
| KRH76945 | Soybean | nucleus | 25.76 | 10.09 |
Protein Annotations
| EMBL:ACUP02000615 | EnsemblPlants:KRH76467 | EnsemblPlantsGene:GLYMA_01G154200 | EntrezGene:100779127 | Gene3D:1.10.245.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain |
| PANTHER:PTHR13844 | PANTHER:PTHR13844:SF8 | PFAM:PF02201 | ProteinID:KRH76467 | ProteinID:KRH76467.1 | SEG:seg |
| SMART:SM00151 | SUPFAM:SSF47592 | UniParc:UPI00023378EA | UniProt:I1J881 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr1:+:49151305..49153175
Molecular Weight (calculated)
13958.1 Da
IEP (calculated)
10.941
GRAVY (calculated)
-0.132
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPARVFGAI AGRAFMAAAA KSAAKKKPAP SSGAAAKAAV KKTAAPRTTN SGIQKVVPVS SELGDFLGAP QVSRTEAVKK VWAYIKLQNL QNPANKKEIF
101: CDEKLKTIFE GKDKVGFTEI AKLLSNHFVK SV
101: CDEKLKTIFE GKDKVGFTEI AKLLSNHFVK SV
001: MSRVFGACRV LMAKAASSTG AKTGRQGTGI LKVVPVSKPL ANFIGENEVS RTTAVKKIWE YIKLNNLQNP VNKREILCDE QLKTIFSGKD TVGFLEISKL
101: LSQHFPKSA
101: LSQHFPKSA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q93W30]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.