Factsheet for GSMUA_Achr10P18070_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76269	Canola	cytosol	41.84	67.05
PGSC0003DMT400025339	Potato	plastid	58.16	59.85
PGSC0003DMT400059663	Potato	plastid	58.16	59.42
GSMUA_Achr7P26330_001	Banana	plastid	57.45	57.86
GSMUA_Achr3P30180_001	Banana	plastid	57.45	57.86
VIT_03s0091g00430.t01	Wine grape	plastid	58.16	56.55
CDY69869	Canola	plastid	54.61	56.2
GSMUA_AchrUn_...	Banana	cytosol	27.66	55.71
AT4G34290.1	Thale cress	plastid	56.74	55.56
Bra011519.1-P	Field mustard	plastid	53.9	55.07
CDX75421	Canola	plastid	53.9	55.07
AT2G14880.1	Thale cress	plastid	54.61	54.61
CDX72477	Canola	plastid	53.19	53.96
CDY45303	Canola	plastid	53.9	53.9
Bra017644.1-P	Field mustard	plastid	53.19	53.19
Solyc01g107330.2.1	Tomato	plastid	54.61	52.74
PGSC0003DMT400066526	Potato	plastid	53.9	52.41
TraesCS5D01G115900.1	Wheat	plastid	51.77	47.71
TraesCS5B01G108300.1	Wheat	plastid	51.77	47.71
EES17082	Sorghum	plastid	49.65	47.62
HORVU5Hr1G028290.1	Barley	plastid	51.06	47.06
TraesCS5A01G105100.1	Wheat	plastid	51.06	46.45
Zm00001d035321_P001	Maize	plastid	46.81	46.15
GSMUA_Achr7P17340_001	Banana	mitochondrion	42.55	46.15
KRH77941	Soybean	nucleus	45.39	46.04
KRH27569	Soybean	nucleus	45.39	43.24
Bra034617.1-P	Field mustard	cytosol	23.4	39.29
GSMUA_Achr4P05700_001	Banana	cytosol, mitochondrion	34.04	36.92
GSMUA_Achr2P13370_001	Banana	cytosol	14.89	32.81
Os12t0507500-00	Rice	plastid	34.04	26.67
GSMUA_Achr4P12450_001	Banana	endoplasmic reticulum, extracellular, vacuole	37.59	26.11
GSMUA_Achr4P28200_001	Banana	nucleus	28.37	12.66
GSMUA_Achr1P19520_001	Banana	cytosol	25.53	9.76
GSMUA_Achr3P11900_001	Banana	cytosol	24.82	9.59

Protein Annotations

EnsemblPlants:GSMUA_Achr10P18070_001	EnsemblPlants:GSMUA_Achr10T18070_001	EnsemblPlantsGene:GSMUA_Achr10G18070_001	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF8	PFAM:PF02201	SEG:seg	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI000296D81E
UniProt:M0RJ82	MapMan:35.2	:	:	:	:

Description

Putative Protein TRI1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G18070_001]

Coordinates

chr10:+:24983412..24985835

Molecular Weight (calculated)

15056.4 Da

IEP (calculated)

11.395

GRAVY (calculated)

-0.078

Length

141 amino acids

Sequence
(BLAST)

001: MAATIPSNGL CASAFLTADH PLRRRLAASV AFPLHRRAAS ATAVRAASSS KPASGAGARP ARGITKPRPV SPAMQALVGV PEIPRTQALK LIWAYIKEHN
101: LQDPENKKII VCDEKLKAIF GGRDRVGFLE ISGLINPHFS K

Best Arabidopsis Sequence Match ( AT4G34290.1 )
(BLAST)

001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL

Arabidopsis Description

SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.