CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011519.1-P	Field mustard	plastid	96.35	95.65
CDX75421	Canola	plastid	95.62	94.93
CDX76269	Canola	cytosol	57.66	89.77
CDY45303	Canola	plastid	88.32	85.82
CDX72477	Canola	plastid	86.86	85.61
AT4G34290.1	Thale cress	plastid	83.94	79.86
AT2G14880.1	Thale cress	plastid	74.45	72.34
VIT_03s0091g00430.t01	Wine grape	plastid	66.42	62.76
PGSC0003DMT400025339	Potato	plastid	62.04	62.04
PGSC0003DMT400059663	Potato	plastid	60.58	60.14
Solyc01g107330.2.1	Tomato	plastid	63.5	59.59
PGSC0003DMT400066526	Potato	plastid	62.77	59.31
GSMUA_Achr10P...	Banana	plastid	56.2	54.61
KRH77941	Soybean	nucleus	54.01	53.24
GSMUA_Achr3P30180_001	Banana	plastid	51.82	50.71
KRH27569	Soybean	nucleus	54.74	50.68
GSMUA_Achr7P26330_001	Banana	plastid	50.37	49.29
HORVU5Hr1G028290.1	Barley	plastid	45.99	41.18
TraesCS5B01G108300.1	Wheat	plastid	45.99	41.18
TraesCS5D01G115900.1	Wheat	plastid	45.99	41.18
CDY49157	Canola	mitochondrion	27.74	40.86
CDY12300	Canola	mitochondrion	27.74	40.86
EES17082	Sorghum	plastid	43.07	40.14
TraesCS5A01G105100.1	Wheat	plastid	45.26	40.0
Zm00001d035321_P001	Maize	plastid	41.61	39.86
CDY47689	Canola	mitochondrion	32.85	38.46
CDY50950	Canola	mitochondrion	31.39	37.07
CDY51761	Canola	mitochondrion	35.77	36.57
CDY50651	Canola	plastid	35.04	32.88
Os12t0507500-00	Rice	plastid	29.93	22.78
CDY27449	Canola	nucleus	31.39	13.27
CDX76378	Canola	cytosol	31.39	12.61
CDX79150	Canola	nucleus	32.12	12.57
CDX98747	Canola	nucleus	32.85	12.33
CDX94096	Canola	nucleus	32.85	12.06
CDX92300	Canola	nucleus	25.55	7.74
CDX99270	Canola	nucleus	25.55	7.54

Protein Annotations

EnsemblPlants:CDY69869	EnsemblPlantsGene:GSBRNA2T00093098001	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8
PFAM:PF02201	ProteinID:CDY69869	ProteinID:CDY69869.1	SEG:seg	SMART:SM00151	SUPFAM:SSF47592
UniParc:UPI0004EE56B2	UniProt:A0A078JSS1	MapMan:35.2	:	:	:

Description

BnaCnng65730DBnaCnng65730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSS1]

Coordinates

chrLK040560:+:50..1082

Molecular Weight (calculated)

15170.7 Da

IEP (calculated)

10.667

GRAVY (calculated)

-0.210

Length

137 amino acids

Sequence
(BLAST)

001: MALSTGIFST FLCVKTAPLR SSPFPRVSSQ PANLRMVRAV TSATAASSEP SATKTREPRG IMKPRPVSPE MQDVVGEPVI PRTQALKRIW AYIKEHDLQD
101: PQDKKVIVCD EKLKKIFAGK DRVGFLEIAK LIGPHFL

Best Arabidopsis Sequence Match ( AT4G34290.1 )
(BLAST)

001: MALSSGIFST TFLCVDTAPL RSSMLSPSSL RLSPNHPTNL RMVRAVTSAA AASSDPTTTT KTREPRGIMK PRPVSQAMQD VVGVPEIPRT QALKRIWAYI
101: KEHDLQDPQN KRDILCDEKL KKIFEGKERV GFLEIAKLIG PHFL

Arabidopsis Description

SWIB/MDM2 domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SYZ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.