Factsheet for Solyc01g107330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2
peroxisome 1
cytosol 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066526	Potato	plastid	93.15	93.79
CDX76269	Canola	cytosol	43.15	71.59
VIT_03s0091g00430.t01	Wine grape	plastid	67.81	68.28
CDY45303	Canola	plastid	62.33	64.54
Bra011519.1-P	Field mustard	plastid	60.27	63.77
CDX75421	Canola	plastid	60.27	63.77
CDY69869	Canola	plastid	59.59	63.5
CDX72477	Canola	plastid	60.27	63.31
Bra017644.1-P	Field mustard	plastid	60.96	63.12
AT2G14880.1	Thale cress	plastid	59.59	61.7
AT4G34290.1	Thale cress	plastid	60.27	61.11
GSMUA_Achr10P...	Banana	plastid	52.74	54.61
KRH77941	Soybean	nucleus	48.63	51.08
Zm00001d035321_P001	Maize	plastid	47.95	48.95
KRH27569	Soybean	nucleus	49.32	48.65
GSMUA_Achr3P30180_001	Banana	plastid	46.58	48.57
Bra034617.1-P	Field mustard	cytosol	27.4	47.62
HORVU5Hr1G028290.1	Barley	plastid	49.32	47.06
EES17082	Sorghum	plastid	47.26	46.94
TraesCS5A01G105100.1	Wheat	plastid	49.32	46.45
GSMUA_Achr7P26330_001	Banana	plastid	44.52	46.43
TraesCS5B01G108300.1	Wheat	plastid	48.63	46.41
TraesCS5D01G115900.1	Wheat	plastid	48.63	46.41
Solyc08g005590.2.1	Tomato	nucleus	36.3	43.44
Solyc08g075400.2.1	Tomato	plastid	35.62	41.94
Os12t0507500-00	Rice	plastid	32.88	26.67
Solyc01g108290.2.1	Tomato	nucleus	26.71	11.71
Solyc02g065160.1.1	Tomato	cytoskeleton, cytosol, nucleus	22.6	11.58
Solyc11g012290.1.1	Tomato	cytosol	23.97	9.75

Protein Annotations

EnsemblPlants:Solyc01g107330.2.1	EnsemblPlantsGene:Solyc01g107330.2	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF8
PFAM:PF02201	SignalP:SignalP-noTM	SMART:SM00151	SUPFAM:SSF47592	UniParc:UPI0002767C7F	UniProt:K4B2V0
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:94896258..94898820

Molecular Weight (calculated)

16000.7 Da

IEP (calculated)

11.100

GRAVY (calculated)

-0.062

Length

146 amino acids

Sequence
(BLAST)

001: MAVSLGLFSV FSTGVTASFA KSDSFSSVRL ASPLAAHHVN NLRTVRTVTF ATASKPVAEP KKREPRGIMK PRRVSPEMQA FLGGMSEVPR TQALKLIWAH
101: IKANDLQDPQ NKKVIICDEK LKTIFGGKER VGFLEIAGLI SPHFLK

Best Arabidopsis Sequence Match ( AT2G14880.1 )
(BLAST)

001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.