Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034159_P002 | Maize | cytosol | 39.37 | 71.92 |
| EER93399 | Sorghum | nucleus | 43.37 | 63.19 |
| GSMUA_Achr2P13370_001 | Banana | cytosol | 8.0 | 59.38 |
| TraesCS5A01G401500.2 | Wheat | nucleus | 42.53 | 59.06 |
| TraesCS5D01G411700.1 | Wheat | nucleus | 42.11 | 58.82 |
| HORVU5Hr1G097590.1 | Barley | nucleus | 43.58 | 57.98 |
| TraesCS5B01G406200.2 | Wheat | nucleus | 42.74 | 55.77 |
| VIT_03s0063g01070.t01 | Wine grape | nucleus | 12.63 | 48.0 |
| GSMUA_Achr4P28200_001 | Banana | nucleus | 31.79 | 47.78 |
| Zm00001d013204_P001 | Maize | nucleus | 37.68 | 46.61 |
| KRH76945 | Soybean | nucleus | 32.84 | 46.29 |
| KRH28515 | Soybean | nucleus | 33.26 | 45.66 |
| VIT_07s0197g00070.t01 | Wine grape | nucleus | 25.68 | 40.94 |
| PGSC0003DMT400001975 | Potato | nucleus | 21.89 | 35.14 |
| Solyc02g065160.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 20.21 | 33.68 |
| AT3G19080.4 | Thale cress | nucleus | 28.84 | 29.53 |
| Bra022384.1-P | Field mustard | nucleus | 27.37 | 28.82 |
| CDX92300 | Canola | nucleus | 27.37 | 28.76 |
| CDX99270 | Canola | nucleus | 27.79 | 28.45 |
| Os03t0761000-01 | Rice | nucleus | 8.21 | 27.08 |
| Os02t0130000-01 | Rice | mitochondrion, plastid | 7.37 | 26.72 |
| Os08t0502800-01 | Rice | nucleus | 21.05 | 24.63 |
| Os04t0665500-01 | Rice | cytosol | 18.74 | 23.0 |
| AT1G49520.1 | Thale cress | nucleus | 16.84 | 21.51 |
| Os12t0507500-00 | Rice | plastid | 6.95 | 18.33 |
Protein Annotations
| EnsemblPlants:Os03t0764450-00 | EnsemblPlantsGene:Os03g0764450 | Gene3D:1.10.245.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR036885 | InterPro:SWIB_MDM2_dom_sf | InterPro:SWIB_MDM2_domain | InterPro:SWIB_domain | PANTHER:PTHR13844 | PANTHER:PTHR13844:SF23 |
| PFAM:PF02201 | ProteinID:BAS86537.1 | SEG:seg | SMART:SM00151 | SUPFAM:SSF47592 | UniParc:UPI000393AD75 |
| UniProt:A0A0N7KI38 | MapMan:35.2 | : | : | : | : |
Description
Similar to SWIB/MDM2 domain containing protein. (Os03t0764450-00)
Coordinates
chr3:+:31622649..31630078
Molecular Weight (calculated)
54282.0 Da
IEP (calculated)
12.022
GRAVY (calculated)
-1.070
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: LIGPHVGNPP KSYDFRKSCR ISNKFRNTIF YSKESYINLS YTIIKSFEIF QRYIFFHTSP FFQTIQARGG RGAWGRRQKT LAEHVKAWLG QAPPENPNFS
101: PRKTKTRRAR QRASPLHPPV RHGRSDRAER DETQTERASR RAARRWCRTR SWWSGCGRCC GRPTSTPPPP PSCAAASRRT SASTSPTRSS SSASRSTSSS
201: PRSPARPSRR RRRCPRRRSP RPGRRQRVES QGALKGRGKK RRRKRKRRRR RRRRKTVAAA GRSGANTDGK RKGGGFTKLC SISPTLQEFV GASELARTEV
301: VKKLWAYIRE NNLQDPSNKR KILCDERLKK IFNVNSIDMF QMNKALTKHI WPLNSDGPVT SASPERSTPK EKPQKRERNE GKKQKGGSSG SGSGFLVPLQ
401: LSDDLVKFIG TGESMLSRSD VVKRMWDYIK ENKLQDPSDR RKIICDEKLK DLLQVESFNG FTVSKLLAPH FTKTK
101: PRKTKTRRAR QRASPLHPPV RHGRSDRAER DETQTERASR RAARRWCRTR SWWSGCGRCC GRPTSTPPPP PSCAAASRRT SASTSPTRSS SSASRSTSSS
201: PRSPARPSRR RRRCPRRRSP RPGRRQRVES QGALKGRGKK RRRKRKRRRR RRRRKTVAAA GRSGANTDGK RKGGGFTKLC SISPTLQEFV GASELARTEV
301: VKKLWAYIRE NNLQDPSNKR KILCDERLKK IFNVNSIDMF QMNKALTKHI WPLNSDGPVT SASPERSTPK EKPQKRERNE GKKQKGGSSG SGSGFLVPLQ
401: LSDDLVKFIG TGESMLSRSD VVKRMWDYIK ENKLQDPSDR RKIICDEKLK DLLQVESFNG FTVSKLLAPH FTKTK
001: MVSDLDLVTR LREILGSSDL NTATPASVRR QLEADFGVDL TDKKAYIRDQ IDTFLESNGA VEDKPESPKV EEYINADEIK AEIEGGDGED LDGDGSGSEE
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQDPSDKRR VICDEKLKEL FEVDSFEDTS VSKLLTNHFI KAEQ
101: EKEERPVKAK KRGGGITKVS QLSPQLEKVV GASQLGRTEV VKKMWAYIRE KDLQDPKDRR KIVCDELLHS LFRVKTINMF QMNKALTKHI WPLGDGDGCA
201: NDVKEEDEDE ASEGTDKKGE QSEEVEENKE EESEEQEVRS LRKRKRKKPA KSVEKPKRKG GGGFAKVCSL SPELQAFTGV TELARTEVVK LLWKYIKENN
301: LQDPNDKRSI ICDESFRSLF PVESINMFQM NKQLTKHIWP LEDNAGESVS SKSPKNGKQK MESDGDTDSE EPNEKDKKQK KEVLAPLPLS DALVKFLGDG
401: ENSLSRADVV KRLWEYINHN DLQDPSDKRR VICDEKLKEL FEVDSFEDTS VSKLLTNHFI KAEQ
Arabidopsis Description
SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178V7N9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.