Factsheet for VIT_03s0063g01070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P13370_001	Banana	cytosol	25.6	50.0
VIT_15s0024g00650.t01	Wine grape	mitochondrion	28.0	27.34
VIT_02s0087g00810.t01	Wine grape	mitochondrion	23.2	25.22
VIT_07s0197g00070.t01	Wine grape	nucleus	52.8	22.15
Zm00001d034159_P002	Maize	cytosol	45.6	21.92
GSMUA_Achr4P28200_001	Banana	nucleus	52.8	20.89
Solyc01g108290.2.1	Tomato	nucleus	55.2	20.72
VIT_03s0091g00430.t01	Wine grape	plastid	24.0	20.69
PGSC0003DMT400066349	Potato	cytosol	55.2	20.54
EER93399	Sorghum	nucleus	51.2	19.63
TraesCS5D01G411700.1	Wheat	nucleus	48.8	17.94
TraesCS5A01G401500.2	Wheat	nucleus	48.0	17.54
TraesCS5B01G406200.2	Wheat	nucleus	48.8	16.76
Zm00001d013204_P001	Maize	nucleus	49.6	16.15
HORVU5Hr1G097590.1	Barley	nucleus	45.6	15.97
AT1G49520.1	Thale cress	nucleus	46.4	15.59
VIT_19s0090g01460.t01	Wine grape	cytosol	37.6	14.2
VIT_00s0187g00240.t01	Wine grape	nucleus	36.8	13.37
VIT_00s0187g00190.t01	Wine grape	cytosol	36.8	13.26
Bra022384.1-P	Field mustard	nucleus	47.2	13.08
CDX92300	Canola	nucleus	47.2	13.05
CDX99270	Canola	nucleus	47.2	12.72
Os03t0764450-00	Rice	nucleus	48.0	12.63
AT3G19080.4	Thale cress	nucleus	46.4	12.5

Protein Annotations

ArrayExpress:VIT_03s0063g01070	EMBL:FN596006	EnsemblPlants:VIT_03s0063g01070.t01	EnsemblPlantsGene:VIT_03s0063g01070	Gene3D:1.10.245.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain
PANTHER:PTHR13844	PANTHER:PTHR13844:SF23	PFAM:PF02201	ProteinID:CCB56905	ProteinID:CCB56905.1	SMART:SM00151
SUPFAM:SSF47592	UniParc:UPI0002108B4E	UniProt:F6HQE8	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr3:-:4502406..4509862

Molecular Weight (calculated)

14438.7 Da

IEP (calculated)

9.910

GRAVY (calculated)

-0.349

Length

125 amino acids

Sequence
(BLAST)

001: MSIDSILIYK KLKKEKRSDK VVIDVKKRGG YNKLCSLSPQ LQKIVGAAEL TGPQVVKKFW TYIQENSLQD PKNNRNIICD ESLQELFHVD SINMFEMNKV
101: LSKHVWQLNV EDGISLNKTK IFLTI

Best Arabidopsis Sequence Match ( AT1G49520.1 )
(BLAST)

001: MVSDSDLVTQ LREILRSSDL ETTTPASVRR QLEVYFGVEL TDKKAFVREQ IDAFLESDAL LESKPEQEEE DCNGDQNDEE GSENDDDKTE LPVKAKKRGG
101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE
201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD
301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE

Arabidopsis Description

At1g49520 [Source:UniProtKB/TrEMBL;Acc:Q501B9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.