CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052873_P001	Maize	cytosol	88.32	88.94
TraesCS7D01G242300.1	Wheat	plastid	41.36	74.68
Os08t0502800-01	Rice	nucleus	64.72	68.23
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	53.5	67.95
TraesCS7A01G243700.1	Wheat	cytosol	61.22	62.68
VIT_00s0187g00240.t01	Wine grape	nucleus	40.19	50.0
VIT_00s0187g00190.t01	Wine grape	cytosol	40.19	49.57
VIT_19s0090g01460.t01	Wine grape	cytosol	36.92	47.73
KRH01994	Soybean	cytosol	36.45	47.42
KRH51159	Soybean	cytosol	36.68	47.29
CDX76378	Canola	cytosol	37.38	46.92
CDY27449	Canola	nucleus	35.51	46.91
Bra020851.1-P	Field mustard	nucleus	34.35	45.79
CDX79150	Canola	nucleus	37.15	45.43
CDX98747	Canola	nucleus	37.62	44.11
Bra013614.1-P	Field mustard	nucleus	36.92	44.01
KRH46275	Soybean	cytosol	33.88	43.94
KXG27277	Sorghum	cytosol	40.42	43.8
Bra019378.1-P	Field mustard	cytosol	37.15	43.68
CDX94096	Canola	nucleus	37.62	43.16
AT4G22360.1	Thale cress	nucleus	38.55	42.86
Solyc11g012290.1.1	Tomato	cytosol	35.05	41.78
PGSC0003DMT400034549	Potato	cytosol	34.81	41.05
EER93399	Sorghum	nucleus	25.47	33.44
EES06225	Sorghum	mitochondrion	9.11	29.77
EES17082	Sorghum	plastid	10.05	29.25
EER90846	Sorghum	plastid	9.35	27.97

Protein Annotations

EnsemblPlants:KXG25652	EnsemblPlantsGene:SORBI_3007G213600	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844	PANTHER:PTHR13844:SF10
PFAM:PF02201	ProteinID:KXG25652	ProteinID:KXG25652.1	SEG:seg	SMART:SM00151	SUPFAM:SSF47592
UniParc:UPI00081AD28D	UniProt:A0A1B6PJ28	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:64230044..64233507

Molecular Weight (calculated)

46020.3 Da

IEP (calculated)

8.348

GRAVY (calculated)

-0.510

Length

428 amino acids

Sequence
(BLAST)

001: MLSDQELAQY VESFVQHTAA QGGTGISADA VVRQLGAQLG VDLSPKAHLI RSVLVALLGP AAAPAPDPAA SRKDHFDPAT AAGGGARAEA PAQQQLPFST
101: STAAASSAPA PAPAVPHFFP QQHQHQMQSF LSAPQQYQHQ QQQRAGGPPS PFDVPASYRY GHQPFAQADQ AQLQRLVQLQ QHQQQQQLAA AARAAAAAAP
201: TPAESPRARA PATAPAGSKK DSSASAGAKR RGGPGGLNKV CGVSPELQAI VGEPAMARTE IVKQLWAYIR RNNLQDPNNK RKIICNDELR LVFETDSTDM
301: FQMNKLLSKH IRPLESKTDD SKREAKKLKP EGGEQIPKVE TDVNQLPLTV SDALATFFGT GEREMVHSEA VKRVWEHIKS NNLEDPENPT VILCDSKLKQ
401: LFGCESLAAH GVSELLSDHL YKQQSTKI

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.