Factsheet for Zm00001d052873_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25652	Sorghum	nucleus	88.94	88.32
TraesCS7D01G242300.1	Wheat	plastid	40.94	73.42
Os08t0502800-01	Rice	nucleus	64.24	67.24
HORVU7Hr1G049900.8	Barley	cytosol, nucleus, plastid	51.53	64.99
TraesCS7A01G243700.1	Wheat	cytosol	59.06	60.05
VIT_00s0187g00240.t01	Wine grape	nucleus	40.24	49.71
VIT_00s0187g00190.t01	Wine grape	cytosol	40.24	49.28
VIT_19s0090g01460.t01	Wine grape	cytosol	36.71	47.13
CDY27449	Canola	nucleus	35.76	46.91
KRH01994	Soybean	cytosol	36.24	46.81
CDX76378	Canola	cytosol	37.41	46.63
KRH51159	Soybean	cytosol	36.24	46.39
Bra020851.1-P	Field mustard	nucleus	34.59	45.79
CDX79150	Canola	nucleus	37.18	45.14
Bra013614.1-P	Field mustard	nucleus	37.18	44.01
KRH46275	Soybean	cytosol	34.12	43.94
CDX98747	Canola	nucleus	37.41	43.56
Bra019378.1-P	Field mustard	cytosol	37.18	43.41
CDX94096	Canola	nucleus	37.65	42.9
Zm00001d026541_P001	Maize	cytosol	39.29	42.6
AT4G22360.1	Thale cress	nucleus	37.65	41.56
Solyc11g012290.1.1	Tomato	cytosol	34.82	41.23
Zm00001d001937_P003	Maize	cytosol	40.94	40.47
PGSC0003DMT400034549	Potato	cytosol	34.35	40.22
Zm00001d034159_P002	Maize	cytosol	22.35	36.54
Zm00001d013221_P001	Maize	plastid	9.18	26.9
Zm00001d015127_P001	Maize	mitochondrion	7.53	26.89
Zm00001d053979_P001	Maize	mitochondrion	8.47	26.87
Zm00001d035321_P001	Maize	plastid	8.94	26.57
Zm00001d013204_P001	Maize	nucleus	23.76	26.3

Protein Annotations

EnsemblPlants:Zm00001d052873_P001	EnsemblPlants:Zm00001d052873_T001	EnsemblPlantsGene:Zm00001d052873	Gene3D:1.10.245.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR036885	InterPro:SWIB_MDM2_dom_sf	InterPro:SWIB_MDM2_domain	InterPro:SWIB_domain	PANTHER:PTHR13844
PANTHER:PTHR13844:SF10	PFAM:PF02201	ProteinID:AQK58265.1	SEG:seg	SMART:SM00151	SUPFAM:SSF47592
UniParc:UPI00084441EC	UniProt:A0A1D6QKL9	MapMan:35.2	:	:	:

Description

SWIB complex BAF60b domain-containing protein

Coordinates

chr4:+:203088415..203093168

Molecular Weight (calculated)

45797.1 Da

IEP (calculated)

7.199

GRAVY (calculated)

-0.512

Length

425 amino acids

Sequence
(BLAST)

001: MLSDQELAQY VESLVQHTAA QGGTGISADA VVRQLGAQLG VDLSPKAQLI RSVLVALLGP AAAPAPDPTG SRKDPFDPAT AAAAGGPRAE TPPQQMHFST
101: AAASSAPAPS PAVPHFFPQQ HQHQMQYFLS APQQYQHQQQ QQRAGASPSP FDIPASYRYG HQPLPQADQA QLQRLVQLQH QQQQLAAAAR VAAAAAPTPG
201: ESPRAPEPPP APAPAASKKN SSASVGAKRK GGPGGLNKVC GVSPELQAIV GEPAMARTEI VKQLWAYIRR NNLQDPNNKR KIICNDELRL VFETDSTDMF
301: QMNKLLSKHI RPLESKNDSK PEAKKLKPQG DEPISSVETD VNQLPLMVSD ALATFFGTGE REMVHSEAVK RVWDHIKSND LEDPENPTVI LCDSKLKQLF
401: GRESLTAHGV SELLSDHLYT QSTNI

Best Arabidopsis Sequence Match ( AT4G22360.1 )
(BLAST)

001: MVSDQDLAKG VETLLRQSDP SSLTSLSSIV QQLEAKLGLD LTEKTTFIRD QINILLRAHQ NPSASVASAS SVQQSHPPPP PSSHQQQNLH SGVNVPPMAK
101: GHFTLSHPSQ FSVSSQSQQY PSHFALQPPY HSYDLNFRQP YPVYMPPQQH QHQQQSPRQQ QSSVMLSHGG NASLSVNQAP KESAPAGTKR KGGPGGLNKV
201: CRVSPELEVV VGEPALPRTE IVRQLWAYIR KNNLQDPSNK RKIICDDALR VVFETDCTDM FKMNKLLAKH ILPLDPSKDS GQAKKAKTEV ETKTETTEPI
301: SSTAISSTVT LSEPLGKFFG TGETEMADEE IIRRVWEYIK LNNLEDPVNP MAIQCDEKLR DLLGCESISA VGINEMLRRH MYKQS

Arabidopsis Description

SWIB complex BAF60b domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q93YR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.