Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025831.1-P | Field mustard | nucleus | 97.56 | 97.56 |
| CDY31481 | Canola | nucleus | 47.8 | 90.32 |
| CDY33634 | Canola | nucleus | 81.95 | 82.35 |
| CDX96631 | Canola | nucleus | 81.46 | 81.46 |
| AT1G20610.1 | Thale cress | nucleus | 79.02 | 75.52 |
| CDX85942 | Canola | nucleus | 68.05 | 68.38 |
| CDX87612 | Canola | nucleus | 71.22 | 67.75 |
| PGSC0003DMT400075380 | Potato | nucleus | 39.02 | 67.51 |
| CDX88261 | Canola | nucleus | 70.73 | 67.44 |
| CDX68105 | Canola | nucleus | 64.39 | 66.84 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 42.93 | 66.42 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 31.46 | 59.45 |
| Solyc04g082430.2.1 | Tomato | nucleus | 56.34 | 58.78 |
| VIT_18s0001g14170.t01 | Wine grape | nucleus | 62.68 | 58.28 |
| PGSC0003DMT400025854 | Potato | nucleus | 59.76 | 55.56 |
| Solyc12g094600.1.1 | Tomato | nucleus | 56.1 | 54.12 |
| Os06t0726800-01 | Rice | nucleus | 54.63 | 53.46 |
| Zm00001d036360_P002 | Maize | nucleus | 55.12 | 53.3 |
| GSMUA_Achr11P... | Banana | nucleus | 52.93 | 53.19 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 54.88 | 53.07 |
| KXG20945 | Sorghum | nucleus | 54.88 | 53.07 |
| KRH60628 | Soybean | nucleus | 51.71 | 52.35 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 53.41 | 52.27 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 53.41 | 52.14 |
| CDX72551 | Canola | nucleus | 50.98 | 52.12 |
| CDY26816 | Canola | nucleus | 51.46 | 51.84 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 52.93 | 51.79 |
| KRH51329 | Soybean | nucleus, plastid | 52.2 | 51.57 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 52.68 | 51.55 |
| CDY30357 | Canola | nucleus | 51.22 | 51.34 |
| CDY29184 | Canola | nucleus | 52.2 | 51.07 |
| CDY67210 | Canola | nucleus | 50.49 | 50.99 |
| CDY07838 | Canola | nucleus | 51.95 | 50.96 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 51.95 | 50.71 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 33.66 | 49.64 |
| Os04t0563700-01 | Rice | mitochondrion | 49.51 | 48.33 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 47.07 | 47.65 |
| EES12664 | Sorghum | nucleus | 49.76 | 47.22 |
| Zm00001d026129_P001 | Maize | nucleus | 48.54 | 46.71 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 46.59 | 46.7 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 46.83 | 45.61 |
| Zm00001d002662_P010 | Maize | nucleus | 49.51 | 44.62 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 46.34 | 40.34 |
| CDY62475 | Canola | nucleus | 30.98 | 36.18 |
| CDY69551 | Canola | nucleus | 31.22 | 36.06 |
| CDY06752 | Canola | nucleus | 23.9 | 34.39 |
| CDY11354 | Canola | plastid | 35.61 | 33.72 |
| CDX80988 | Canola | plastid | 34.88 | 33.41 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 54.39 | 33.38 |
| CDX69311 | Canola | nucleus | 31.95 | 31.26 |
| CDX75659 | Canola | nucleus | 31.95 | 30.61 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 15.61 | 30.33 |
| CDY06757 | Canola | nucleus, plastid | 26.59 | 30.03 |
| CDY66770 | Canola | nucleus | 26.1 | 29.56 |
| CDY47596 | Canola | nucleus | 26.1 | 29.48 |
| CDY17039 | Canola | nucleus | 26.1 | 29.48 |
| CDX88368 | Canola | plastid | 27.32 | 29.47 |
| CDY61993 | Canola | nucleus | 27.07 | 29.44 |
| CDY22369 | Canola | nucleus | 25.12 | 29.34 |
| CDY17091 | Canola | nucleus | 25.61 | 29.33 |
| CDX87520 | Canola | nucleus | 27.56 | 29.27 |
| CDY48212 | Canola | nucleus | 26.83 | 29.18 |
| CDY23653 | Canola | nucleus | 25.37 | 29.13 |
| CDY41784 | Canola | plastid | 24.15 | 29.12 |
| CDY17037 | Canola | nucleus, plastid | 25.61 | 28.85 |
| CDX85466 | Canola | plastid | 29.27 | 28.44 |
| CDY47595 | Canola | nucleus, plastid | 25.61 | 28.3 |
| CDY53304 | Canola | plastid | 28.05 | 28.12 |
| CDX81722 | Canola | nucleus, plastid | 27.56 | 28.04 |
| CDY02719 | Canola | plastid | 29.02 | 27.74 |
| CDY65994 | Canola | plastid | 29.76 | 27.54 |
| CDX97090 | Canola | nucleus | 29.27 | 27.52 |
| CDX92090 | Canola | mitochondrion, nucleus | 23.66 | 27.17 |
| CDX69768 | Canola | nucleus, plastid | 28.78 | 27.0 |
| CDX87087 | Canola | plastid | 27.32 | 26.86 |
| CDX96836 | Canola | nucleus, plastid | 28.78 | 26.82 |
| CDY25649 | Canola | plastid | 28.54 | 26.77 |
| CDX79389 | Canola | plastid | 27.8 | 26.33 |
| CDY66415 | Canola | nucleus | 27.8 | 26.27 |
| CDX67944 | Canola | plastid | 27.56 | 26.16 |
| CDY36574 | Canola | mitochondrion, nucleus | 27.8 | 26.15 |
| CDY37592 | Canola | mitochondrion, plastid | 28.78 | 25.82 |
| CDY38664 | Canola | nucleus, plastid | 28.05 | 25.27 |
| CDY33338 | Canola | nucleus | 34.88 | 24.49 |
| CDY39984 | Canola | plastid | 26.59 | 24.33 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 35.37 | 23.81 |
| CDX87305 | Canola | plastid | 26.83 | 23.81 |
| CDX96819 | Canola | nucleus | 34.63 | 22.02 |
| CDX83953 | Canola | nucleus | 34.63 | 21.68 |
| CDY14091 | Canola | plastid | 34.63 | 21.65 |
| CDY04980 | Canola | nucleus | 34.63 | 19.78 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 27.07 | 11.22 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | GO:A0A078GSU6 | UniProt:A0A078GSU6 | EnsemblPlants:CDY29520 | ProteinID:CDY29520 |
| ProteinID:CDY29520.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00043216001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF350 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0004EF313A | : | : | : | : |
Description
BnaA06g14500DBnaA06g14500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSU6]
Coordinates
chrLK032238:+:427328..429415
Molecular Weight (calculated)
46986.3 Da
IEP (calculated)
5.008
GRAVY (calculated)
-0.345
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTSDDAGGG GKIMPTRRAL SAINKNITEP PSSYPYALNN KRSLSERNVI CNKPPLRRPR TRKFADNKTQ IQEEETKKSN SLPSEEALAE RVDIDVYACG
101: KEGDYFNEPV FVQHTETMIE ETYQMEEGIK VEDADKEKER VINIDACVEK NSLAVVEYID DIFNFHNKSE ELSCVPSNYM DNQQDLNEMM RGILIDWLIE
201: VHDKFELMEE TLYLTVNIID RFLAVHQIVR KMLQLVGVTA LLLACKYEEV SVPVVDDLIL ISDKAYTRRE VLDMEKLIAN TLQFNFSLPT PYVFMRRFLK
301: AAQSDKKVEV LSFFIIELCL VEYEMLEYTP SKLAASAIYT ARCTLDGFEE WSKTCEFHTG YKEEQLLACT RKMVAFHHNA GTGKLTGVHR KYNTSKFSYA
401: ARTEPAGFLL
101: KEGDYFNEPV FVQHTETMIE ETYQMEEGIK VEDADKEKER VINIDACVEK NSLAVVEYID DIFNFHNKSE ELSCVPSNYM DNQQDLNEMM RGILIDWLIE
201: VHDKFELMEE TLYLTVNIID RFLAVHQIVR KMLQLVGVTA LLLACKYEEV SVPVVDDLIL ISDKAYTRRE VLDMEKLIAN TLQFNFSLPT PYVFMRRFLK
301: AAQSDKKVEV LSFFIIELCL VEYEMLEYTP SKLAASAIYT ARCTLDGFEE WSKTCEFHTG YKEEQLLACT RKMVAFHHNA GTGKLTGVHR KYNTSKFSYA
401: ARTEPAGFLL
001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
Arabidopsis Description
CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.