CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74764
CDX95663
CDY18902
CDY27361
CDY37063
CDY53895

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07300.1	CDX74764	AT2G45760.1	17631528
AT5G07300.1	CDX95663	AT2G45760.1	17631528
AT5G07300.1	CDY18902	AT2G45760.1	17631528
AT5G07300.1	CDY27361	AT2G45760.1	17631528
AT5G07300.1	CDY37063	AT2G45760.1	17631528
AT5G07300.1	CDY53895	AT2G45760.1	17631528

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20017	Soybean	cytosol	65.31	58.61
CDX70026	Canola	cytosol	93.06	38.71
Bra009273.1-P	Field mustard	cytosol	92.65	38.54
CDX98984	Canola	cytosol	91.43	38.16
CDX78287	Canola	cytosol	89.8	37.48
CDX81044	Canola	cytosol	88.57	36.97
AT5G07300.1	Thale cress	cytosol	86.12	36.01
GSMUA_AchrUn_...	Banana	cytosol, golgi, plastid	63.67	35.62
CDY00235	Canola	cytosol	77.14	32.59
CDX86951	Canola	cytosol	76.33	32.24
VIT_17s0000g00210.t01	Wine grape	cytosol	73.47	31.25
Solyc03g118200.2.1	Tomato	cytosol	73.06	30.86
KRH41052	Soybean	endoplasmic reticulum	71.84	30.34
KRH54085	Soybean	cytosol	71.43	30.28
Solyc06g068840.2.1	Tomato	cytosol	66.12	28.08
KRH63871	Soybean	cytosol	69.39	27.33
Os02t0521300-01	Rice	plasma membrane	61.22	25.68
CDY50776	Canola	cytosol	7.76	25.68
CDY22660	Canola	cytosol	60.41	25.47
CDY06335	Canola	cytosol	59.18	24.87
KXG30293	Sorghum	cytosol	57.96	24.57
TraesCS6A01G189800.1	Wheat	cytosol	57.55	24.56
TraesCS6D01G176800.1	Wheat	cytosol, nucleus, plastid	57.55	24.56
TraesCS6B01G235200.1	Wheat	plastid	57.55	24.44
Zm00001d016615_P002	Maize	plasma membrane	53.47	24.08
CDX99619	Canola	cytosol	6.53	23.53
HORVU6Hr1G041140.14	Barley	mitochondrion	57.55	21.89
CDY27584	Canola	cytosol	16.73	17.67
CDX84471	Canola	cytosol, mitochondrion	25.31	17.08
CDY43775	Canola	cytosol, mitochondrion	25.31	16.89
CDX84957	Canola	cytosol	25.71	16.36
CDY31343	Canola	cytosol	24.49	16.35
CDY39835	Canola	cytosol	24.49	16.35
CDY56212	Canola	plastid	27.76	15.42
CDY01855	Canola	cytosol, plastid	27.35	15.19
CDX67997	Canola	cytosol	23.27	15.08
CDX79314	Canola	cytosol, plastid	23.27	15.04
CDX91935	Canola	cytosol	26.94	14.44
CDX85597	Canola	cytosol, plastid	26.53	14.41
CDX74310	Canola	cytosol	26.94	14.41
CDY49066	Canola	cytosol	26.94	14.35
CDY37509	Canola	cytosol	26.94	14.35
CDX87387	Canola	plastid	23.27	14.18
CDY09854	Canola	nucleus, plastid	26.94	14.16
CDX69581	Canola	nucleus, plastid	26.94	14.16
CDX91062	Canola	cytosol, plastid	26.12	14.16
CDX88533	Canola	plastid	23.27	14.14
CDX78576	Canola	cytosol, plastid	26.53	13.8
CDX70564	Canola	cytosol, plastid	26.53	13.8
CDY52873	Canola	plastid	15.92	12.75
CDX85680	Canola	mitochondrion, plastid	7.35	12.24
CDX72278	Canola	plastid	17.14	11.32
CDY03984	Canola	cytosol	9.8	8.08
CDY49067	Canola	extracellular	4.9	8.0
CDY27585	Canola	cytosol	3.67	6.92
CDY25816	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:27.2.7	Gene3D:3.40.50.410	GO:A0A078EI24	InterPro:BONZAI	EnsemblPlants:CDX98983	ProteinID:CDX98983
ProteinID:CDX98983.1	InterPro:Copine	GO:GO:0003674	GO:GO:0005488	GO:GO:0005544	GO:GO:0008150
GO:GO:0008219	GO:GO:0008289	GO:GO:0009987	GO:GO:0060548	EnsemblPlantsGene:GSBRNA2T00107102001	InterPro:IPR036465
PFAM:PF07002	PANTHER:PTHR10857	PANTHER:PTHR10857:SF108	SUPFAM:SSF53300	UniParc:UPI0004EE4BF1	InterPro:vWFA_dom_sf

Description

BnaC09g48520D

Coordinates

chrLK031907:-:993882..995555

Molecular Weight (calculated)

26873.0 Da

IEP (calculated)

4.729

GRAVY (calculated)

0.034

Length

245 amino acids

Sequence
(BLAST)

001: MPSQILYTSC LYILNKQKKN RYINTHLLYL SNNAYQRAIV EVGEVLQFYD TDKRFPAWGF GARPIDIPVS HCFNLNGSST YCEVDGIQGI MNAYNGALFN
101: VSFAGPTLFG PVINAAATIA SESLAQNSRR YYVLLIITDG VITDLQETRD ALVSASDLPL SILIVGVGGA DYKEMEVLDG DKGERLESSS GRVASRDIVQ
201: FVALRDIQYG EVSVVEALLA ELPSQFLAYM KNRNITPTTS TTSAS

Best Arabidopsis Sequence Match ( AT1G08860.1 )
(BLAST)

001: MGGCLSGDVK GGKQAIGGVQ QRPTSSTIAN NAAHNDAVDF FFRSRGQYPL FSQIELTLSA SNLLDCDITS KSDPMAVMYL RKKDGRLEEI GRTEVILNNL
101: NPKWIEKITV SFQFEAVQTL VFHVYDVDTR YHNVPVKTLK LKDQDFLGEG TCVLSEIMTR QNRTLTLTLT GNVRAGVNRN LGTLSIQAEE TVASKTVAEI
201: NFRCVNLDNK DLFSKSDPFL RISRVVETSA AVPICRTEVV DNNLNPMWRP VCLTMQQFGS KDTPLVIECL DFNTSGNHEL IGKTEKSVAE LERLCLQKEA
301: ANFVYPSLSH GRNKVLKGQL IVDRYVEKVQ YSFLDYISSG FELNFMVAVD FTASNGDPRT PSSLHYIDPS GRLNSYQQAI MEVGEVIQFY DSDKRFPAWG
401: FGGRTSDGSV SHAFNLNGAS YGDEVVGVEG IMVAYASALR NVSLAGPTLF SNVVDKAAHT ASQSLSQNSP KYFVLLIITD GVLTDMAGTV DALVRASDLP
501: LSVLIVGVGN TDFKQMEMLD ADNGRRLESS TGRIATRDIV QFVPMKDIHS GLVSVVQALL EELPGQFLTY VRSRKINPIG APAI

Arabidopsis Description

BON3Protein BONZAI 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5XQC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.