Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012681.1-P | Field mustard | cytosol | 29.29 | 77.68 |
| Bra018339.1-P | Field mustard | cytosol | 36.7 | 73.65 |
| CDY25816 | Canola | cytosol | 11.45 | 69.39 |
| CDX99619 | Canola | cytosol | 15.49 | 67.65 |
| CDY50776 | Canola | cytosol | 15.49 | 62.16 |
| CDX79314 | Canola | cytosol, plastid | 31.99 | 25.07 |
| CDX67997 | Canola | cytosol | 31.65 | 24.87 |
| KRH07102 | Soybean | cytosol | 10.77 | 22.86 |
| CDY27585 | Canola | cytosol | 9.76 | 22.31 |
| CDX88533 | Canola | plastid | 29.97 | 22.08 |
| CDX87387 | Canola | plastid | 29.29 | 21.64 |
| CDY31343 | Canola | cytosol | 26.26 | 21.25 |
| CDY43775 | Canola | cytosol, mitochondrion | 25.59 | 20.71 |
| CDX84471 | Canola | cytosol, mitochondrion | 25.25 | 20.66 |
| CDY39835 | Canola | cytosol | 25.25 | 20.44 |
| GSMUA_Achr4P09310_001 | Banana | endoplasmic reticulum, golgi | 24.92 | 20.05 |
| CDY49067 | Canola | extracellular | 9.43 | 18.67 |
| CDX84957 | Canola | cytosol | 23.91 | 18.44 |
| TraesCS7A01G381200.1 | Wheat | cytosol, plastid | 26.6 | 17.91 |
| TraesCS7D01G377500.1 | Wheat | plastid | 27.27 | 17.84 |
| CDY56212 | Canola | plastid | 25.93 | 17.46 |
| CDY01855 | Canola | cytosol, plastid | 25.93 | 17.46 |
| TraesCS7B01G283100.1 | Wheat | cytosol | 25.93 | 17.38 |
| TraesCS7B01G283200.1 | Wheat | cytosol | 26.6 | 17.32 |
| TraesCS7D01G377600.1 | Wheat | plastid | 26.6 | 17.29 |
| VIT_00s0780g00040.t01 | Wine grape | cytosol, mitochondrion, nucleus | 25.25 | 17.16 |
| TraesCS7A01G381300.1 | Wheat | plastid | 26.26 | 17.07 |
| Os06t0608800-02 | Rice | nucleus | 25.59 | 17.0 |
| Zm00001d046554_P003 | Maize | cytosol, plastid | 25.25 | 16.85 |
| KXG20338 | Sorghum | nucleus | 25.25 | 16.78 |
| CDX91062 | Canola | cytosol, plastid | 24.58 | 16.15 |
| CDX85597 | Canola | cytosol, plastid | 24.24 | 15.96 |
| CDX78576 | Canola | cytosol, plastid | 24.58 | 15.5 |
| CDX69581 | Canola | nucleus, plastid | 24.24 | 15.45 |
| CDX70564 | Canola | cytosol, plastid | 24.24 | 15.29 |
| Zm00001d036831_P006 | Maize | cytosol | 23.57 | 15.28 |
| CDY09854 | Canola | nucleus, plastid | 23.91 | 15.24 |
| CDX74310 | Canola | cytosol | 22.9 | 14.85 |
| CDY37509 | Canola | cytosol | 22.9 | 14.78 |
| CDY49066 | Canola | cytosol | 22.9 | 14.78 |
| CDX91935 | Canola | cytosol | 22.56 | 14.66 |
| KRH07106 | Soybean | cytosol, plastid | 13.47 | 13.75 |
| CDX72278 | Canola | plastid | 14.48 | 11.59 |
| CDY52873 | Canola | plastid | 11.78 | 11.44 |
| CDX85680 | Canola | mitochondrion, plastid | 5.05 | 10.2 |
| CDX98983 | Canola | cytosol, plastid | 8.08 | 9.8 |
| CDY27584 | Canola | cytosol | 6.4 | 8.19 |
| CDX98984 | Canola | cytosol | 8.75 | 4.43 |
| CDX70026 | Canola | cytosol | 8.75 | 4.41 |
| CDY00235 | Canola | cytosol | 8.42 | 4.31 |
| CDX86951 | Canola | cytosol | 8.08 | 4.14 |
| CDX81044 | Canola | cytosol | 7.74 | 3.92 |
| CDX78287 | Canola | cytosol | 7.74 | 3.92 |
| CDY22660 | Canola | cytosol | 7.41 | 3.79 |
| CDY06335 | Canola | cytosol | 7.41 | 3.77 |
Protein Annotations
| EnsemblPlants:CDY03984 | EnsemblPlantsGene:GSBRNA2T00117513001 | InterPro:Copine | PANTHER:PTHR10857 | PANTHER:PTHR10857:SF47 | PFAM:PF07002 |
| ProteinID:CDY03984 | ProteinID:CDY03984.1 | SEG:seg | UniParc:UPI0004EDFB94 | MapMan:35.1 | : |
Description
BnaC02g36990D
Coordinates
chrLK031948:-:114343..116679
Molecular Weight (calculated)
33510.9 Da
IEP (calculated)
5.424
GRAVY (calculated)
-0.404
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRLLIEIQS VTLCPLDLLN LESEKLHCLI PAPKAYMLRL SLGPKSIDYV PYEEMTANKR LRSECEEFIS PCNSYALSIV LIGVGDGRWE DMRKFDDNIP
101: KREFDNFQIM KRDSSESAKE AAFALAALME IPFQYQAATD SAYKQETKEE ESVRKVVREE EKGVLLLDND SGGSYKAAAH EKDGDNAPFH ESDDNSSTWY
201: DERKLLWAPS SPQKLKIGIV LSKGQLPGGH TVIHGPFVSL MLYQRHALRG TLKKHLITAS YVDDETSMLH DMTKNAWITV LGETTSHNSV NLTWPLV
101: KREFDNFQIM KRDSSESAKE AAFALAALME IPFQYQAATD SAYKQETKEE ESVRKVVREE EKGVLLLDND SGGSYKAAAH EKDGDNAPFH ESDDNSSTWY
201: DERKLLWAPS SPQKLKIGIV LSKGQLPGGH TVIHGPFVSL MLYQRHALRG TLKKHLITAS YVDDETSMLH DMTKNAWITV LGETTSHNSV NLTWPLV
001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T
Arabidopsis Description
RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.