Factsheet for Bra018339.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012681.1-P	Field mustard	cytosol	75.68	100.0
CDY03984	Canola	cytosol	73.65	36.7
Bra035112.1-P	Field mustard	plastid	45.95	16.92
KRH07106	Soybean	cytosol, plastid	31.76	16.15
Bra024254.1-P	Field mustard	mitochondrion	37.16	15.03
GSMUA_Achr4P09310_001	Banana	endoplasmic reticulum, golgi	36.49	14.63
TraesCS7A01G381200.1	Wheat	cytosol, plastid	40.54	13.61
Bra032793.1-P	Field mustard	nucleus	34.46	13.35
TraesCS7D01G377500.1	Wheat	plastid	40.54	13.22
TraesCS7B01G283100.1	Wheat	cytosol	38.51	12.87
Zm00001d046554_P003	Maize	cytosol, plastid	37.84	12.58
KXG20338	Sorghum	nucleus	37.84	12.53
Os06t0608800-02	Rice	nucleus	37.84	12.53
TraesCS7B01G283200.1	Wheat	cytosol	38.51	12.5
TraesCS7D01G377600.1	Wheat	plastid	38.51	12.47
TraesCS7A01G381300.1	Wheat	plastid	38.51	12.47
Bra004260.1-P	Field mustard	plastid	37.16	12.47
VIT_00s0780g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	35.14	11.9
Bra039105.1-P	Field mustard	nucleus	36.49	11.84
Bra000997.1-P	Field mustard	nucleus	36.49	11.79
Bra023465.1-P	Field mustard	cytosol, plastid	35.81	11.75
Bra006253.1-P	Field mustard	nucleus, plastid	37.16	11.68
Bra008758.1-P	Field mustard	nucleus	35.81	11.37
Zm00001d036831_P006	Maize	cytosol	34.46	11.14
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	25.68	11.11
Bra021976.1-P	Field mustard	plastid	21.62	8.6
Bra014181.1-P	Field mustard	plastid	20.95	8.16
Bra007134.1-P	Field mustard	mitochondrion	11.49	4.68
KRH07102	Soybean	cytosol	4.05	4.29
Bra010041.1-P	Field mustard	cytosol	14.86	3.79
Bra029301.1-P	Field mustard	cytosol, plastid	14.86	3.79
Bra005931.1-P	Field mustard	cytosol	13.51	3.41
Bra009273.1-P	Field mustard	cytosol	13.51	3.4
Bra031645.1-P	Field mustard	cytosol	12.84	3.26

Protein Annotations

EnsemblPlants:Bra018339.1	EnsemblPlants:Bra018339.1-P	EnsemblPlantsGene:Bra018339	InterPro:Copine	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47
PFAM:PF07002	UniParc:UPI0002547BB2	UniProt:M4DP98	MapMan:35.1	:	:

Description

AT1G79380 (E=4e-021) | copine-related

Coordinates

chrA05:-:7568588..7570302

Molecular Weight (calculated)

16892.5 Da

IEP (calculated)

7.668

GRAVY (calculated)

-0.165

Length

148 amino acids

Sequence
(BLAST)

001: MSRLLIEIQS VTLCPLDLLN LGRVRSYIVL YQHLKNMLRL SLGPRVTRGV DKAEGELSQQ EIYVNASSYA LSIALIGVGD GRWEDMRKFD DKIPKREFDN
101: FKLKKHLITA SYVDDETSML HEMAKNAWIT VLGETTSHNS VNLTWPLV

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.