Factsheet for Bra021976.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52873	Canola	plastid	70.97	86.27
CDX72278	Canola	plastid	83.33	83.56
Bra014181.1-P	Field mustard	plastid	75.54	73.95
CDX85680	Canola	mitochondrion, plastid	29.03	73.47
Bra035112.1-P	Field mustard	plastid	33.87	31.34
Bra024254.1-P	Field mustard	mitochondrion	25.81	26.23
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	23.12	25.15
Bra032793.1-P	Field mustard	nucleus	25.81	25.13
Bra023465.1-P	Field mustard	cytosol, plastid	28.76	23.73
Bra039105.1-P	Field mustard	nucleus	28.76	23.46
Bra008758.1-P	Field mustard	nucleus	29.03	23.18
Bra006253.1-P	Field mustard	nucleus, plastid	29.03	22.93
Bra000997.1-P	Field mustard	nucleus	28.23	22.93
Bra004260.1-P	Field mustard	plastid	26.88	22.68
Bra018339.1-P	Field mustard	cytosol	8.6	21.62
Bra012681.1-P	Field mustard	cytosol	5.91	19.64
Bra007134.1-P	Field mustard	mitochondrion	13.98	14.33
GSMUA_AchrUn_...	Banana	cytosol	6.18	12.37
Bra009273.1-P	Field mustard	cytosol	17.2	10.87
OQU79015	Sorghum	mitochondrion	2.42	10.84
Bra029301.1-P	Field mustard	cytosol, plastid	16.67	10.67
Bra031645.1-P	Field mustard	cytosol	16.67	10.63
Bra010041.1-P	Field mustard	cytosol	16.4	10.52
Bra005931.1-P	Field mustard	cytosol	16.4	10.39

Protein Annotations

EnsemblPlants:Bra021976.1	EnsemblPlants:Bra021976.1-P	EnsemblPlantsGene:Bra021976	InterPro:Copine	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47
PFAM:PF07002	SEG:seg	UniParc:UPI0002545985	UniProt:M4DZM9	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2

Description

AT1G79380 (E=3e-042) | copine-related

Coordinates

chrA02:-:18089675..18092566

Molecular Weight (calculated)

41346.4 Da

IEP (calculated)

5.627

GRAVY (calculated)

-0.081

Length

372 amino acids

Sequence
(BLAST)

001: MVSTLSTSLS LTYSDACISQ SALATDSAAA TLTLSPRLRR CFSDYSAVRI LLARGSRSPP VLHYPMRLQI SFPFPQLGLD GSYTRATSHR LGIVIDTDLG
101: KLRSALREIV NPYENAIFVI GKTLAPSDED NFISCFGFVD STTHGEEVFS LHSDNSPSHG FEDVLPCYRG FTPNFPLSGP ISYELLIDAA VDIVEQSNRQ
201: FHVLVIGADG HVKGNSDNKR KQLFLNVSVG DGPWADMRKM GDLIPKRVDL SGIISSPISV PFVSFFDLDL LSAKFLNFTE IMREGPSELA KEREFSLTDL
301: ICDSDEEWIR GGADEDHPVS QYLRDISMQR TLGFKKRALG LLRLIRIYIS LSGRNTELDV IITRELEKVY HA

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.