CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25816	Canola	cytosol	8.43	14.29
KXG34172	Sorghum	nucleus	37.35	8.01
KXG25698	Sorghum	cytosol	37.35	7.71
EES04073	Sorghum	nucleus	40.96	7.41
EES13310	Sorghum	mitochondrion	32.53	6.62
KXG20338	Sorghum	nucleus	33.73	6.26
CDX85680	Canola	mitochondrion, plastid	4.82	2.72
Bra021976.1-P	Field mustard	plastid	10.84	2.42
CDX72278	Canola	plastid	9.64	2.16
GSMUA_AchrUn_...	Banana	cytosol	4.82	2.15
Bra014181.1-P	Field mustard	plastid	9.64	2.11
CDY52873	Canola	plastid	6.02	1.63
EER98488	Sorghum	endoplasmic reticulum, golgi	4.82	1.28
KXG21864	Sorghum	cytosol	6.02	0.85
OQU79014	Sorghum	plastid	3.61	0.57
KXG30293	Sorghum	cytosol	3.61	0.52

Protein Annotations

EnsemblPlants:OQU79015	EnsemblPlantsGene:SORBI_3008G088809	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14879	PANTHER:PTHR14879:SF5	PFAM:PF13920	PFscan:PS50089	ProteinID:OQU79015
ProteinID:OQU79015.1	SignalP:SignalP-noTM	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000B8B9AD8	UniProt:A0A1Z5R6D9
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:19733021..19735733

Molecular Weight (calculated)

9240.4 Da

IEP (calculated)

9.299

GRAVY (calculated)

-0.208

Length

83 amino acids

Sequence
(BLAST)

1: MASWWRSAWW MGRASRRSTA DLATVAGGVA MKQRKCLSMC PVCLSKPRDM AFGCGHQTCS ECGPQVADCP ICRRPIDTRV KLY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.