CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G048620.13	Barley	cytosol	80.35	80.95
Os08t0494300-01	Rice	plasma membrane	79.35	80.56
TraesCS7B01G134400.1	Wheat	cytosol	79.85	80.45
KXG20338	Sorghum	nucleus	64.93	58.39
EES13310	Sorghum	mitochondrion	53.98	53.19
EES04073	Sorghum	nucleus	60.7	53.16
KXG34172	Sorghum	nucleus	50.5	52.45
EER98488	Sorghum	endoplasmic reticulum, golgi	40.05	51.44
OQU79014	Sorghum	plastid	51.99	39.51
OQU79015	Sorghum	mitochondrion	7.71	37.35
KXG21864	Sorghum	cytosol	22.89	15.73
KXG30293	Sorghum	cytosol	20.4	14.19

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	UniProt:A0A1B6PJ50	InterPro:Copine	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	EnsemblPlants:KXG25698	ProteinID:KXG25698	ProteinID:KXG25698.1
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF97	SMART:SM00184
SMART:SM00327	EnsemblPlantsGene:SORBI_3007G220100	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI00081AB74D	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr7:+:64830934..64834540

Molecular Weight (calculated)

44097.7 Da

IEP (calculated)

6.282

GRAVY (calculated)

-0.441

Length

402 amino acids

Sequence
(BLAST)

001: MGSWCSKENT PGGRQQQHDH NHNHNHSSGA ASKGGKNRYA NFGDDYHTLE QVTNALAHAG LESSNLIVGI DFTKSNEWTG QVSFNNRSLH AMGNTPNPYE
101: QAISIIGRTL ARFDEDNLIP CFGFGDTTTH DQSVFSFYRD NQPCDGFEQA LARYRELVPQ LNLAGPTSFA PIIETAIGIV DSSGGQYHVL LIIADGQVTR
201: SVETGNGQLS RQERETIDAI VKASDYPLSI VLVGVGDGPW DMMRQFDDNI PSRAFDNFQF VNFTQIMSRP IPTSKKEAEF ALSALMEIPE QFKAALSLQL
301: LGKRRGFLNR PVLPPPGNGG LKYSGWSAVK PTECTSYGSA PEKPSAPRLD SDIGDPQTCP ICWSQTKDLA FGCGHQTCSD CAKDLKVCPI CQRAISTRLK
401: LY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.