Factsheet for Os08t0494300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G134400.1	Wheat	cytosol	86.87	86.22
HORVU7Hr1G048620.13	Barley	cytosol	86.11	85.46
KXG25698	Sorghum	cytosol	80.56	79.35
Os06t0608800-02	Rice	nucleus	67.68	59.96
Os01t0908700-01	Rice	plasma membrane, plastid	62.63	55.61
Os08t0135400-01	Rice	plasma membrane	54.04	53.37
Os01t0960500-01	Rice	plasma membrane	51.77	52.97
Os09t0565300-01	Rice	cytosol	10.86	44.79
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	59.09	42.86
Os05t0373300-01	Rice	plasma membrane	22.73	15.1
Os02t0521300-01	Rice	plasma membrane	20.71	14.04
Os09t0565200-02	Rice	extracellular	3.28	4.04
Os09t0565350-00	Rice	cytosol	1.52	1.35

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EntrezGene:4345919	ProteinID:BAD10026.1	ProteinID:BAD10104.1
ProteinID:BAF24042.1	ProteinID:BAT06048.1	InterPro:Copine	ProteinID:EEE68918.1	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	EnsemblPlantsGene:Os08g0494300	EnsemblPlants:Os08t0494300-01	PFAM:PF07002	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF97	UniProt:Q6Z5F6	SMART:SM00327	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI000023AFC1	InterPro:VWF_A	RefSeq:XP_015651091.1	RefSeq:XP_015651092.1	RefSeq:XP_015651093.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf	:	:	:

Description

Copine domain containing protein. (Os08t0494300-01)

Coordinates

chr8:-:24397939..24401324

Molecular Weight (calculated)

43728.4 Da

IEP (calculated)

5.801

GRAVY (calculated)

-0.405

Length

396 amino acids

Sequence
(BLAST)

001: MGAFCSKQNP SGQQPHCCNH SSSSNAAPKG NNRFAKFGDD YHTLEQVTDA LAHAGLESSN LIVGIDFTKS NEWTGRVSFN NQSLHSLGHI SNPYEQAISI
101: IGQTLSRFDE DNLIPCYGFG DATTHDQKVF SFYPDNKPCD GFEQALDRYR EIVPQLRLAG PTSFAPMIET AIGIVDSSGG QYHVLLIIAD GQVTRSVDTG
201: NGQLSPQERE TIDAIVKASD YPLSIVLVGV GDGPWDMMRQ FDDNIPSRAF DNFQFVNFTE IMSRPVPASK KEAEFALSAL MEIPEQFKAA INLQLLGKRR
301: GFPHRTVLPP PVRDFQQYYG CSTVKETQST SYGSLQKKTS APKQDSDIGD QTCPICWLEA KNLAFGCGHQ TCSDCGKDLK VCPICQREIS TRIRLY

Best Arabidopsis Sequence Match ( AT1G67800.1 )
(BLAST)

001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.