Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G134400.1 | Wheat | cytosol | 96.24 | 96.24 |
| Os08t0494300-01 | Rice | plasma membrane | 85.46 | 86.11 |
| KXG25698 | Sorghum | cytosol | 80.95 | 80.35 |
| HORVU5Hr1G091920.4 | Barley | endoplasmic reticulum | 38.1 | 42.94 |
| HORVU5Hr1G039100.3 | Barley | endoplasmic reticulum, extracellular, golgi | 56.89 | 42.12 |
| HORVU3Hr1G110850.8 | Barley | cytosol | 36.59 | 41.95 |
| HORVU3Hr1G110870.14 | Barley | mitochondrion | 49.87 | 41.72 |
| HORVU3Hr1G092250.6 | Barley | plastid | 57.64 | 41.44 |
| HORVU6Hr1G010680.1 | Barley | cytosol | 22.06 | 14.81 |
| HORVU1Hr1G058000.10 | Barley | cytosol | 22.56 | 13.62 |
| HORVU6Hr1G041140.14 | Barley | mitochondrion | 21.3 | 13.2 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | MapMan:19.2.2.1.6.2 | Gene3D:3.30.40.10 | UniProt:A0A287WEF6 | InterPro:Copine | EnsemblPlantsGene:HORVU7Hr1G048620 |
| EnsemblPlants:HORVU7Hr1G048620.13 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 | InterPro:IPR036465 | PFAM:PF07002 |
| PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR10857 | PANTHER:PTHR10857:SF97 | SMART:SM00327 | SUPFAM:SSF53300 |
| SUPFAM:SSF57850 | UniParc:UPI000B476090 | InterPro:VWF_A | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:vWFA_dom_sf |
Description
No Description!
Coordinates
chrchr7H:-:166516685..166520158
Molecular Weight (calculated)
43477.1 Da
IEP (calculated)
6.281
GRAVY (calculated)
-0.372
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAFGSKECS SGREHHHCSQ DHGKSAAAGG KNRFAKFGDD YHTLEQVTDA LSHAGLESSN LIVGIDFTKS NEWTGRVSFN NRSLHAIGNT PNPYEQAISI
101: IGRTLARFDE DNLIPCFGFG DATTHDQKVF SFYPENQPCD GFEQALGRYR EIVPQLRLAG PTSFAPMIET AIGIVDSSGG QYHVLLIIAD GQVTRSVDTG
201: NGQLSPQERE TIDAIVKASD YPLSIVLVGV GDGPWDMMRQ FDDNIPARAF DNFQFVNFTE IMSRPIPTSK KEAEFALSAL MEIPAQFKAT MNLQLLGKQR
301: GFPHRSVLPP PVSVCQQPSG CSAVKQTQST GTSYGSPQKN ASAPRQDSDV GDQQTCPICW SEAKNLAFGC GHQTCADCGK DLKVCPLCQR AISTRIRLY
101: IGRTLARFDE DNLIPCFGFG DATTHDQKVF SFYPENQPCD GFEQALGRYR EIVPQLRLAG PTSFAPMIET AIGIVDSSGG QYHVLLIIAD GQVTRSVDTG
201: NGQLSPQERE TIDAIVKASD YPLSIVLVGV GDGPWDMMRQ FDDNIPARAF DNFQFVNFTE IMSRPIPTSK KEAEFALSAL MEIPAQFKAT MNLQLLGKQR
301: GFPHRSVLPP PVSVCQQPSG CSAVKQTQST GTSYGSPQKN ASAPRQDSDV GDQQTCPICW SEAKNLAFGC GHQTCADCGK DLKVCPLCQR AISTRIRLY
001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY
Arabidopsis Description
Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.