Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G371300.1 | Wheat | endoplasmic reticulum, vacuole | 80.23 | 89.59 |
| TraesCS5D01G378400.2 | Wheat | endoplasmic reticulum, extracellular | 81.36 | 88.62 |
| TraesCS5A01G368900.1 | Wheat | endoplasmic reticulum, extracellular | 75.99 | 85.13 |
| EER98488 | Sorghum | endoplasmic reticulum, golgi | 59.6 | 67.41 |
| Zm00001d005369_P001 | Maize | mitochondrion | 19.21 | 55.74 |
| HORVU7Hr1G048620.13 | Barley | cytosol | 42.94 | 38.1 |
| HORVU3Hr1G110870.14 | Barley | mitochondrion | 42.09 | 31.24 |
| HORVU5Hr1G039100.3 | Barley | endoplasmic reticulum, extracellular, golgi | 45.76 | 30.06 |
| HORVU3Hr1G110850.8 | Barley | cytosol | 28.53 | 29.02 |
| HORVU3Hr1G092250.6 | Barley | plastid | 44.92 | 28.65 |
| HORVU6Hr1G010680.1 | Barley | cytosol | 21.75 | 12.96 |
| HORVU1Hr1G058000.10 | Barley | cytosol | 21.75 | 11.65 |
| HORVU6Hr1G041140.14 | Barley | mitochondrion | 19.49 | 10.71 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G091920.4 | EnsemblPlantsGene:HORVU5Hr1G091920 | InterPro:Copine | PANTHER:PTHR10857 | PANTHER:PTHR10857:SF68 | PFAM:PF07002 |
| SEG:seg | SignalP:SignalP-noTM | UniParc:UPI000B46D330 | UniProt:A0A287S869 | MapMan:19.2.2.1.5.3.2 | MapMan:19.2.2.1.6.2 |
Description
No Description!
Coordinates
chrchr5H:-:587299620..587302569
Molecular Weight (calculated)
38291.4 Da
IEP (calculated)
5.827
GRAVY (calculated)
-0.156
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MILSAFLLLC CAVATWAASP AAKAAHESQM PSTSERGADA DRQAYGTLDQ VNAALQRVGL ESSNLIIGVD FTKSNQWTGK RCFAGRSLHD LAAGPNPYEE
101: AIGIVGKTLS AYDEDNAIPC FGFGDSKSLW NGVPPVVNCL TIDLTGGDLI RLPACLPAST HDQGVFSFYG DGRPCAGFPE ALRRYREIAA AVHLSGPTSL
201: APIIEAAMGI VQRSGHQYHI LLIIADGQVP RGSSAHRASY PDESRSENYM EERTLQALIQ ASHFPLSIVL IGVGDGPWGD DQMRFHDDRR RFDNFQFVDF
301: TKIMSAEMSR AEKEERFGLE ALGKIPSQYA AIIGQRISDL AARAPARTPI PPPS
101: AIGIVGKTLS AYDEDNAIPC FGFGDSKSLW NGVPPVVNCL TIDLTGGDLI RLPACLPAST HDQGVFSFYG DGRPCAGFPE ALRRYREIAA AVHLSGPTSL
201: APIIEAAMGI VQRSGHQYHI LLIIADGQVP RGSSAHRASY PDESRSENYM EERTLQALIQ ASHFPLSIVL IGVGDGPWGD DQMRFHDDRR RFDNFQFVDF
301: TKIMSAEMSR AEKEERFGLE ALGKIPSQYA AIIGQRISDL AARAPARTPI PPPS
001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY
Arabidopsis Description
Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.