Factsheet for Zm00001d005369_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041244_P001	Maize	extracellular	31.97	36.45
EER98488	Sorghum	endoplasmic reticulum, golgi	74.59	29.07
Zm00001d006136_P001	Maize	cytosol	20.49	25.77
TraesCS5B01G371300.1	Wheat	endoplasmic reticulum, vacuole	57.38	22.08
TraesCS5A01G368900.1	Wheat	endoplasmic reticulum, extracellular	56.56	21.84
TraesCS5D01G378400.2	Wheat	endoplasmic reticulum, extracellular	55.74	20.92
HORVU5Hr1G091920.4	Barley	endoplasmic reticulum	55.74	19.21
Zm00001d035211_P001	Maize	mitochondrion	41.8	12.62
Zm00001d048784_P001	Maize	cytosol	31.15	12.34
Zm00001d046554_P003	Maize	cytosol, plastid	44.26	12.13
Zm00001d036831_P006	Maize	cytosol	45.08	12.01
Zm00001d042437_P005	Maize	cytosol	44.26	11.44
Zm00001d011821_P007	Maize	cytosol	40.16	11.42
Zm00001d034150_P001	Maize	cytosol	14.75	10.65
Zm00001d012101_P002	Maize	mitochondrion	43.44	10.43
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	45.08	10.17
Zm00001d037872_P001	Maize	plasma membrane	20.49	4.24
Zm00001d016615_P002	Maize	plasma membrane	17.21	3.86
Zm00001d024705_P001	Maize	cytosol	0.82	1.06

Protein Annotations

EnsemblPlants:Zm00001d005369_P001	EnsemblPlants:Zm00001d005369_T001	EnsemblPlantsGene:Zm00001d005369	GO:GO:0003674	GO:GO:0003824	GO:GO:0016874
InterPro:Copine	PANTHER:PTHR10857	PANTHER:PTHR10857:SF68	PFAM:PF07002	ProteinID:ONM20927.1	UniParc:UPI0008441484
UniProt:A0A1D6EM25	MapMan:35.1	:	:	:	:

Description

E3 ubiquitin-protein ligase RGLG1

Coordinates

chr2:+:171122914..171123806

Molecular Weight (calculated)

13530.3 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.208

Length

122 amino acids

Sequence
(BLAST)

001: MTNAFSFYRG GRACNGVNEA LQRILILQVP TSTSARGLEE AKIRKLPRRL EERTVQALIH ASDSPLSIVL VGVGNGPWDD LFMDFTEIMS RETSQGDKEG
101: KFTLEALMKI PAQHDAIISQ NI

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.