Factsheet for Zm00001d048784_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27584	Canola	cytosol	45.45	60.34
EES04073	Sorghum	nucleus	74.68	50.11
TraesCS3A01G414400.2	Wheat	cytosol	70.13	49.54
Os01t0908700-01	Rice	plasma membrane, plastid	70.45	48.65
Zm00001d042437_P005	Maize	cytosol	74.03	48.31
CDX84957	Canola	cytosol	60.06	48.05
Bra032793.1-P	Field mustard	nucleus	59.42	47.91
TraesCS3D01G408900.1	Wheat	cytosol	72.08	47.64
TraesCS3B01G449200.1	Wheat	cytosol	72.08	47.54
GSMUA_Achr8P01300_001	Banana	nucleus	66.23	47.0
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	64.29	46.26
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	64.61	45.96
Solyc03g111870.2.1	Tomato	nucleus	64.94	45.77
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	63.31	45.67
Zm00001d034150_P001	Maize	cytosol	25.0	45.56
Zm00001d012101_P002	Maize	mitochondrion	74.35	45.08
VIT_01s0137g00460.t01	Wine grape	nucleus	64.61	45.02
KRG94356	Soybean	nucleus	62.01	44.63
CDX85597	Canola	cytosol, plastid	65.26	44.57
Bra023465.1-P	Field mustard	cytosol, plastid	65.26	44.57
GSMUA_Achr9P29460_001	Banana	nucleus	67.21	44.23
CDX91062	Canola	cytosol, plastid	64.29	43.81
Zm00001d046554_P003	Maize	cytosol, plastid	62.99	43.6
Bra008758.1-P	Field mustard	nucleus	65.26	43.13
CDX69581	Canola	nucleus, plastid	65.26	43.13
Bra000997.1-P	Field mustard	nucleus	63.96	43.01
CDX74310	Canola	cytosol	63.96	43.01
CDX91935	Canola	cytosol	63.64	42.89
KRH43098	Soybean	endoplasmic reticulum, golgi	63.96	42.83
CDY09854	Canola	nucleus, plastid	64.61	42.7
KRH59243	Soybean	endoplasmic reticulum, golgi	63.64	42.61
CDY49066	Canola	cytosol	63.31	42.39
Bra039105.1-P	Field mustard	nucleus	62.66	42.32
Bra006253.1-P	Field mustard	nucleus, plastid	64.61	42.25
CDX78576	Canola	cytosol, plastid	64.61	42.25
CDX70564	Canola	cytosol, plastid	64.61	42.25
CDY37509	Canola	cytosol	62.99	42.17
AT5G14420.2	Thale cress	nucleus, plastid	63.96	42.09
Zm00001d036831_P006	Maize	cytosol	62.34	41.92
KRG97516	Soybean	golgi, plasma membrane	62.34	41.83
VIT_14s0066g00290.t01	Wine grape	mitochondrion	62.34	41.65
CDY01855	Canola	cytosol, plastid	59.09	41.27
Bra004260.1-P	Field mustard	plastid	59.09	41.27
CDY56212	Canola	plastid	59.09	41.27
KRH31355	Soybean	golgi, plasma membrane	61.69	41.04
AT1G67800.2	Thale cress	plasma membrane	59.74	40.62
Zm00001d035211_P001	Maize	mitochondrion	53.25	40.59
PGSC0003DMT400032842	Potato	mitochondrion	63.96	40.53
Solyc02g093520.2.1	Tomato	nucleus	64.61	40.45
KRH58251	Soybean	nucleus	63.64	39.92
AT3G01650.2	Thale cress	cytosol	63.31	39.88
KRG93947	Soybean	nucleus	63.31	39.31
HORVU3Hr1G092250.6	Barley	plastid	70.13	38.92
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	64.29	36.6
AT1G24545.1	Thale cress	cytosol	21.43	36.26
Zm00001d024705_P001	Maize	cytosol	11.04	36.17
Zm00001d011821_P007	Maize	cytosol	49.68	35.66
Zm00001d041244_P001	Maize	extracellular	11.04	31.78
Zm00001d005369_P001	Maize	mitochondrion	12.34	31.15
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	36.04	30.66
Zm00001d006136_P001	Maize	cytosol	8.44	26.8
PGSC0003DMT400039186	Potato	cytosol	65.26	20.94
Zm00001d037872_P001	Maize	plasma membrane	27.92	14.6
Zm00001d016615_P002	Maize	plasma membrane	24.35	13.79
CDY27585	Canola	cytosol	5.19	12.31

Protein Annotations

EnsemblPlants:Zm00001d048784_P001	EnsemblPlants:Zm00001d048784_T001	EnsemblPlantsGene:Zm00001d048784	GO:GO:0003674	GO:GO:0003824	GO:GO:0016874
InterPro:Copine	InterPro:IPR002035	InterPro:IPR036465	InterPro:VWF_A	InterPro:vWFA_dom_sf	PANTHER:PTHR10857
PANTHER:PTHR10857:SF28	PFAM:PF07002	ProteinID:AQK48897.1	SEG:seg	SMART:SM00327	SUPFAM:SSF53300
UniParc:UPI000844E0CD	UniProt:A0A1D6PQ30	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	:	:

Description

E3 ubiquitin-protein ligase RGLG1

Coordinates

chr4:+:5509605..5511675

Molecular Weight (calculated)

33607.4 Da

IEP (calculated)

4.450

GRAVY (calculated)

-0.221

Length

308 amino acids

Sequence
(BLAST)

001: MLRLDYLSER PNLPLLQVTD ALAQAGLESS NLIVGIDFTK SNEWTGKFSF HGRSLYHISN TPNPYEQAIS IIGRTLSKFD EDNLIPCFGF GDASTHDQDV
101: FYFSPDEKPC NGFEEALDRY RELVPHLRLA GPTSFAPIIE MAMTIVEQSG GQYHVLLIIA DGQVTRSVDT ASGQLSSQEQ KTVDAIVKAS ELPLSIVLVG
201: VGDGPWDMMK EFDDNIPARA FDNFQLFSSS GSSDGGAGPA LRRSSSVSSK VENPVQGLIA YCKRSQQLAF VRKSASDAGF RFLSSSASRI AAESESDDLD
301: ELTEICRG

Best Arabidopsis Sequence Match ( AT3G01650.1 )
(BLAST)

001: MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE
101: GYASAASQPN YPPPPSQSQV ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRKSL HHLSNTPNPY EQAITIIGRT
201: LAAFDEDNLI PCYGFGDAST HDQDVFSFYP EGRFCNGFEE VLARYREIVP QLKLAGPTSF APIIEMAMTV VEQSSGQYHV LVIIADGQVT RSVDTEHGRL
301: SPQEQKTVDA IVKASTLPLS IVLVGVGDGP WDMMQEFDDN IPARAFDNFQ FVNFTEIMSK NKDQSRKETE FALSALMEIP PQYKATIELN LLGVRNGNIP
401: QRIPLPPPVQ SGSSFSSSRI PNFEPSVPPY PFESKQMSSA DDIQLCPICL SNPKNMAFGC GHQTCCECGP DLKVCPICRA PIQTRIKLY

Arabidopsis Description

RGLG1E3 ubiquitin-protein ligase RGLG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.