Factsheet for GSMUA_Achr9P29460_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P01300_001	Banana	nucleus	70.51	76.04
Os01t0908700-01	Rice	plasma membrane, plastid	69.66	73.09
EES04073	Sorghum	nucleus	70.51	71.9
TraesCS3D01G408900.1	Wheat	cytosol	71.58	71.89
TraesCS3B01G449200.1	Wheat	cytosol	71.37	71.52
Zm00001d042437_P005	Maize	cytosol	70.3	69.7
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	64.32	69.52
GSMUA_Achr2P05470_001	Banana	nucleus	55.34	69.25
VIT_01s0137g00460.t01	Wine grape	nucleus	65.17	69.0
TraesCS3A01G414400.2	Wheat	cytosol	63.89	68.58
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	62.61	68.46
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	62.39	68.38
Zm00001d048784_P001	Maize	cytosol	44.23	67.21
Bra032793.1-P	Field mustard	nucleus	54.7	67.02
KRG94356	Soybean	nucleus	60.9	66.59
CDX84957	Canola	cytosol	54.7	66.49
CDY27584	Canola	cytosol	32.48	65.52
Solyc03g111870.2.1	Tomato	nucleus	60.68	64.99
Zm00001d012101_P002	Maize	mitochondrion	70.3	64.76
Bra023465.1-P	Field mustard	cytosol, plastid	62.39	64.75
CDX85597	Canola	cytosol, plastid	62.39	64.75
CDX69581	Canola	nucleus, plastid	63.89	64.16
Bra008758.1-P	Field mustard	nucleus	63.89	64.16
CDX91062	Canola	cytosol, plastid	61.97	64.16
GSMUA_Achr6P06710_001	Banana	nucleus	63.03	64.13
Solyc02g093520.2.1	Tomato	nucleus	67.31	64.02
CDY09854	Canola	nucleus, plastid	63.68	63.95
Bra000997.1-P	Field mustard	nucleus	62.39	63.76
CDX74310	Canola	cytosol	62.39	63.76
CDY49066	Canola	cytosol	62.61	63.7
KRH43098	Soybean	endoplasmic reticulum, golgi	62.61	63.7
Bra039105.1-P	Field mustard	nucleus	61.97	63.6
VIT_14s0066g00290.t01	Wine grape	mitochondrion	62.61	63.56
CDX91935	Canola	cytosol	61.97	63.46
CDY37509	Canola	cytosol	62.18	63.26
AT5G14420.2	Thale cress	nucleus, plastid	62.61	62.61
CDX70564	Canola	cytosol, plastid	62.82	62.42
KRG97516	Soybean	golgi, plasma membrane	61.11	62.31
Bra006253.1-P	Field mustard	nucleus, plastid	62.61	62.21
KRH59243	Soybean	endoplasmic reticulum, golgi	61.11	62.17
GSMUA_Achr7P20180_001	Banana	cytosol, nucleus, plastid	23.72	62.01
CDX78576	Canola	cytosol, plastid	62.39	62.0
PGSC0003DMT400032842	Potato	mitochondrion	64.32	61.93
CDY01855	Canola	cytosol, plastid	58.33	61.9
Bra004260.1-P	Field mustard	plastid	58.12	61.68
CDY56212	Canola	plastid	57.91	61.45
GSMUA_Achr9P12830_001	Banana	cytosol, mitochondrion, nucleus, plastid	53.63	61.37
KRH31355	Soybean	golgi, plasma membrane	60.68	61.34
KRH58251	Soybean	nucleus	63.89	60.9
KRG93947	Soybean	nucleus	64.1	60.48
GSMUA_Achr4P09310_001	Banana	endoplasmic reticulum, golgi	47.44	60.16
GSMUA_Achr7P03440_001	Banana	cytosol	39.96	59.74
AT1G67800.2	Thale cress	plasma membrane	57.27	59.16
AT3G01650.2	Thale cress	cytosol	61.75	59.1
GSMUA_AchrUn_...	Banana	mitochondrion	51.71	58.17
GSMUA_Achr10P...	Banana	nucleus	47.01	57.59
HORVU3Hr1G092250.6	Barley	plastid	67.73	57.12
GSMUA_Achr5P25930_001	Banana	extracellular	27.99	55.27
CDY27585	Canola	cytosol	14.74	53.08
GSMUA_Achr5P25940_001	Banana	cytosol	24.36	52.53
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	38.89	50.28
AT1G24545.1	Thale cress	cytosol	18.16	46.7
PGSC0003DMT400039186	Potato	cytosol	60.68	29.58
GSMUA_AchrUn_...	Banana	cytosol	9.83	24.73
GSMUA_AchrUn_...	Banana	cytosol, golgi, plastid	17.73	18.95
GSMUA_Achr5P08050_001	Banana	cytosol	19.44	15.32

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	InterPro:Copine	EnsemblPlantsGene:GSMUA_Achr9G29460_001	EnsemblPlants:GSMUA_Achr9P29460_001
EnsemblPlants:GSMUA_Achr9T29460_001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0U4K3
PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002967C70	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	InterPro:vWFA_dom_sf	:	:	:	:

Description

E3 ubiquitin-protein ligase RGLG1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G29460_001]

Coordinates

chr9:+:33163337..33170674

Molecular Weight (calculated)

51342.6 Da

IEP (calculated)

5.762

GRAVY (calculated)

-0.553

Length

468 amino acids

Sequence
(BLAST)

001: MGGGSSRDSR SRYRSYQQRS HSTEQSSPWG HNYSQDYDPS PPPPPPPSWS YASPPQAYPP PPPPQQQQQQ PQHSAVSRPR TLDRRYSRIS DNYNSLDQVT
101: EALSQAGLES SNLIVGVDFT KSNEWTGKHS FRGRSLHHIG DSPNPYEQAM SIIGRTLSAF DEDNLIPCFG FGDASTHDQD IFSFYPDERP CNGFSEALER
201: YKELVPHLRL AGPTSFAPII EMAMTIVEES GGQYHVLLII ADGQVTRSVD TEYGQFSSQE HKTVEAIVKA SEFPLSIVLV GVGDGPWDMM KEFDDNIPAR
301: AFDNFQFVNF TEIMSKNMPQ ARKETAFALA ALMEIPSQYK ATLELGILGR RSAKSPERVP LPPPVGGYGR SSVGSNSFKS TSFQQSAPSY SGYETASALA
401: SASASASASS TTPSAPSSSY DNQICPICLT NPKDMAFGCG HQTCCECGPS LQTCPICRSE IHTRIKLF

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.