Factsheet for Zm00001d042437_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04073	Sorghum	nucleus	91.31	93.9
Os01t0908700-01	Rice	plasma membrane, plastid	81.14	85.87
Zm00001d012101_P002	Maize	mitochondrion	90.25	83.86
TraesCS3B01G449200.1	Wheat	cytosol	82.84	83.73
TraesCS3D01G408900.1	Wheat	cytosol	82.2	83.26
TraesCS3A01G414400.2	Wheat	cytosol	74.58	80.73
Zm00001d048784_P001	Maize	cytosol	48.31	74.03
GSMUA_Achr8P01300_001	Banana	nucleus	65.04	70.74
GSMUA_Achr9P29460_001	Banana	nucleus	69.7	70.3
VIT_01s0137g00460.t01	Wine grape	nucleus	62.71	66.97
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	60.59	66.82
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	60.38	66.74
VIT_17s0000g09640.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	61.23	66.74
KRG94356	Soybean	nucleus	59.96	66.12
HORVU3Hr1G092250.6	Barley	plastid	77.54	65.95
Bra032793.1-P	Field mustard	nucleus	52.75	65.18
CDY27584	Canola	cytosol	31.78	64.66
CDX84957	Canola	cytosol	52.54	64.42
KRH43098	Soybean	endoplasmic reticulum, golgi	62.71	64.35
KRH59243	Soybean	endoplasmic reticulum, golgi	62.5	64.13
Solyc03g111870.2.1	Tomato	nucleus	59.11	63.84
Bra023465.1-P	Field mustard	cytosol, plastid	60.38	63.19
CDX85597	Canola	cytosol, plastid	60.38	63.19
CDX91062	Canola	cytosol, plastid	59.96	62.61
VIT_14s0066g00290.t01	Wine grape	mitochondrion	60.81	62.26
CDY49066	Canola	cytosol	60.59	62.17
Bra039105.1-P	Field mustard	nucleus	59.96	62.06
CDX69581	Canola	nucleus, plastid	61.23	62.02
CDY09854	Canola	nucleus, plastid	61.23	62.02
Bra008758.1-P	Field mustard	nucleus	61.02	61.8
Bra000997.1-P	Field mustard	nucleus	59.96	61.79
CDX74310	Canola	cytosol	59.96	61.79
CDY37509	Canola	cytosol	60.17	61.74
CDX91935	Canola	cytosol	59.75	61.71
KRG97516	Soybean	golgi, plasma membrane	59.75	61.44
Solyc02g093520.2.1	Tomato	nucleus	63.98	61.38
CDX70564	Canola	cytosol, plastid	60.81	60.93
Zm00001d046554_P003	Maize	cytosol, plastid	57.42	60.9
AT5G14420.2	Thale cress	nucleus, plastid	60.38	60.9
CDY01855	Canola	cytosol, plastid	56.78	60.77
CDX78576	Canola	cytosol, plastid	60.59	60.72
KRH58251	Soybean	nucleus	63.14	60.69
Bra004260.1-P	Field mustard	plastid	56.57	60.54
CDY56212	Canola	plastid	56.36	60.32
Bra006253.1-P	Field mustard	nucleus, plastid	60.17	60.3
KRH31355	Soybean	golgi, plasma membrane	59.11	60.26
KRG93947	Soybean	nucleus	62.92	59.88
PGSC0003DMT400032842	Potato	mitochondrion	61.65	59.88
AT3G01650.2	Thale cress	cytosol	59.75	57.67
AT1G67800.2	Thale cress	plasma membrane	55.3	57.62
Zm00001d036831_P006	Maize	cytosol	54.87	56.55
Zm00001d035211_P001	Maize	mitochondrion	47.25	55.2
Zm00001d006136_P001	Maize	cytosol	11.02	53.61
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	60.38	52.68
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	39.19	51.1
CDY27585	Canola	cytosol	13.98	50.77
Zm00001d034150_P001	Maize	cytosol	18.01	50.3
Zm00001d011821_P007	Maize	cytosol	44.7	49.18
Zm00001d041244_P001	Maize	extracellular	10.81	47.66
Zm00001d024705_P001	Maize	cytosol	8.9	44.68
AT1G24545.1	Thale cress	cytosol	17.16	44.51
Zm00001d005369_P001	Maize	mitochondrion	11.44	44.26
PGSC0003DMT400039186	Potato	cytosol	59.11	29.06
Zm00001d037872_P001	Maize	plasma membrane	22.46	18.0
Zm00001d016615_P002	Maize	plasma membrane	18.43	15.99

Protein Annotations

EntrezGene:100279782	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	UniProt:A0A1D6N3Y9	InterPro:Copine
GO:GO:0003674	GO:GO:0003824	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	ProteinID:ONM35377.1	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857
PANTHER:PTHR10857:SF28	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000843E535	InterPro:VWF_A
EnsemblPlantsGene:Zm00001d042437	EnsemblPlants:Zm00001d042437_P005	EnsemblPlants:Zm00001d042437_T005	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

E3 ubiquitin-protein ligase RGLG1

Coordinates

chr3:+:167218340..167222256

Molecular Weight (calculated)

51457.0 Da

IEP (calculated)

6.081

GRAVY (calculated)

-0.424

Length

472 amino acids

Sequence
(BLAST)

001: MGQNHSAQDG SGHGRRSFQQ QPSAQWGAGG GGYYAQDPNA GYCGAPVPQQ GGGYAAPYLP PAYQYQPTAA APAPQVAKPR QLDRRYSRIA DDYHSVDQVT
101: DALAQAGLES SNLIVGVDFT KSNEWTGKFS FHGRSLHHIS NTPNPYEQAI SIIGRTLSKF DEDNLIPCFG FGDASTHDQD VFCFSPDERP CNGFEEALDR
201: YRELVPHLRL AGPTSFAPII EMAMTIVEQS GGQYHVLLII ADGQVTRSVD TASGQLSSQE QKTVDAIVKA RNTYYFSLSF FCSELPLSIV LVGVGDGPWD
301: MMKEFDDNIP SRAFDNFQFV NFSEIMSKNM AQSRKEAAFA LSALMEIPQQ YKATVELGIL GRRSSKSPNR VPLPPPSASH DAYSYSSKSF SKPTTYPQSS
401: SSSSAYPQYG TPHTATPAAP SSTYDNQVCP ICLVNPKDMA FGCGHQTCCD CGQSLESCPI CRTPITTRIK LY

Best Arabidopsis Sequence Match ( AT5G14420.1 )
(BLAST)

001: MGTGNSKENW RQSSFRSTSA SSASPSSSSW ASQQSYPQYG AESYNYPPPP SYAQPPEYTQ PPPPLYSTQP YSAPSYSAPP SQSYGSDNKK RLERKYSKIS
101: DDYSSLEQVT EALARAGLES SNLIVGIDFT KSNEWTGARS FNRKSLHFIG SSPNPYEQAI TIIGRTLAAF DEDNLIPCYG FGDASTHDQD VFSFNSEDRF
201: CNGFEEVLSR YKEIVPQLKL AGPTSFAPII DMAMTIVEQS GGQYHVLVII ADGQVTRSVD TENGQLSPQE QKTVDAIVQA SKLPLSIVLV GVGDGPWDMM
301: REFDDNIPAR AFDNFQFVNF TEIMAKNKAQ SLKETEFALS ALMEIPQQYK ATIELNLLGR RNGYIPERFP LPPPMRGGSS SYNSPKPSRL PSFKPSVPPH
401: PTEGYHVRSS PVPPPTSSAS DNQLCPICLS NPKDMAFGCG HQTCCECGPD LQMCPICRAP IQTRIKLY

Arabidopsis Description

RGLG2E3 ubiquitin-protein ligase RGLG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY87]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.