CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49067	Canola	extracellular	53.85	46.67
Bra032793.1-P	Field mustard	nucleus	98.46	33.51
CDX84957	Canola	cytosol	93.85	31.69
TraesCS5B01G111900.1	Wheat	cytosol	46.92	25.31
CDY01855	Canola	cytosol, plastid	63.85	18.82
CDY56212	Canola	plastid	63.08	18.59
GSMUA_Achr8P01300_001	Banana	nucleus	53.08	15.9
VIT_01s0137g00460.t01	Wine grape	nucleus	53.85	15.84
KRG97516	Soybean	golgi, plasma membrane	54.62	15.47
CDY37509	Canola	cytosol	54.62	15.43
CDY49066	Canola	cytosol	54.62	15.43
Os01t0908700-01	Rice	plasma membrane, plastid	52.31	15.25
KRH43098	Soybean	endoplasmic reticulum, golgi	53.85	15.22
KRH31355	Soybean	golgi, plasma membrane	53.85	15.12
CDX91062	Canola	cytosol, plastid	52.31	15.04
CDY43775	Canola	cytosol, mitochondrion	42.31	14.99
CDX84471	Canola	cytosol, mitochondrion	41.54	14.88
CDX70564	Canola	cytosol, plastid	53.85	14.86
CDX85597	Canola	cytosol, plastid	51.54	14.86
CDX69581	Canola	nucleus, plastid	53.08	14.81
GSMUA_Achr9P29460_001	Banana	nucleus	53.08	14.74
CDX91935	Canola	cytosol	51.54	14.66
CDX74310	Canola	cytosol	51.54	14.63
TraesCS3D01G408900.1	Wheat	cytosol	52.31	14.59
CDY09854	Canola	nucleus, plastid	52.31	14.59
KRH59243	Soybean	endoplasmic reticulum, golgi	51.54	14.57
TraesCS3B01G449200.1	Wheat	cytosol	52.31	14.56
CDX67997	Canola	cytosol	42.31	14.55
CDY31343	Canola	cytosol	40.77	14.44
CDX88533	Canola	plastid	44.62	14.39
CDX79314	Canola	cytosol, plastid	41.54	14.25
CDX78576	Canola	cytosol, plastid	51.54	14.23
EES04073	Sorghum	nucleus	50.0	14.16
Zm00001d042437_P005	Maize	cytosol	50.77	13.98
CDX87387	Canola	plastid	43.08	13.93
GSMUA_Achr6P06710_001	Banana	nucleus	48.46	13.7
CDY50776	Canola	cytosol	7.69	13.51
CDY39835	Canola	cytosol	37.69	13.35
CDX99619	Canola	cytosol	6.92	13.24
Zm00001d012101_P002	Maize	mitochondrion	50.0	12.8
CDY25816	Canola	cytosol	4.62	12.24
Zm00001d041073_P001	Maize	endoplasmic reticulum, golgi, vacuole	49.23	11.83
Os12t0288400-01	Rice	endoplasmic reticulum, extracellular, vacuole	48.46	11.54
TraesCS5D01G122000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	46.92	11.36
HORVU5Hr1G039100.3	Barley	endoplasmic reticulum, extracellular, golgi	45.38	10.95
TraesCS5A01G103800.2	Wheat	endoplasmic reticulum, extracellular, golgi	46.92	10.91
HORVU3Hr1G092250.6	Barley	plastid	43.08	10.09
CDY03984	Canola	cytosol	22.31	9.76
TraesCS3A01G414400.2	Wheat	cytosol	30.0	8.94
OQU79014	Sorghum	plastid	29.23	7.18
Zm00001d048784_P001	Maize	cytosol	12.31	5.19
CDX98983	Canola	cytosol, plastid	6.92	3.67
CDX72278	Canola	plastid	8.46	2.96
CDY27584	Canola	cytosol	4.62	2.59
CDY52873	Canola	plastid	5.38	2.29
CDX81044	Canola	cytosol	6.92	1.53
CDX78287	Canola	cytosol	6.92	1.53
CDX98984	Canola	cytosol	6.92	1.53
CDX70026	Canola	cytosol	6.92	1.53
CDX86951	Canola	cytosol	6.15	1.38
CDY00235	Canola	cytosol	6.15	1.38
CDY22660	Canola	cytosol	5.38	1.2
CDY06335	Canola	cytosol	5.38	1.2
CDX85680	Canola	mitochondrion, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY27585	EnsemblPlantsGene:GSBRNA2T00038322001	Gene3D:3.30.40.10	GO:A0A078GM03	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR10857	PANTHER:PTHR10857:SF28	PFAM:PF13920	PFscan:PS50089
ProteinID:CDY27585	ProteinID:CDY27585.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EDC8CB
UniProt:A0A078GM03	MapMan:35.1	:	:	:	:

Description

BnaA09g28220DBnaA09g28220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GM03]

Coordinates

chrLK032207:+:152098..152814

Molecular Weight (calculated)

13788.7 Da

IEP (calculated)

8.892

GRAVY (calculated)

-0.175

Length

130 amino acids

Sequence
(BLAST)

001: MGKNIDAGRK EAEFAVSALM EIPSQYKATL ALGLLGRRTG NCPNKIARQP PISGCNRSVS KSSKSSCSSS VTSAPPMSTG SNESQVCPIC LVKTKNMAFN
101: CGHQTCDECG EAIQTCPICR VSIAVRIKLY

Best Arabidopsis Sequence Match ( AT1G67800.1 )
(BLAST)

001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.