CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31343	Canola	cytosol	97.55	97.55
CDX84471	Canola	cytosol, mitochondrion	90.19	91.18
CDY43775	Canola	cytosol, mitochondrion	90.74	90.74
AT5G63970.1	Thale cress	cytosol	89.37	89.37
VIT_04s0044g01620.t01	Wine grape	cytosol	67.03	67.03
GSMUA_Achr10P...	Banana	nucleus	65.94	63.35
Solyc09g065870.2.1	Tomato	nucleus	70.57	61.67
TraesCS3D01G510000.1	Wheat	cytosol	57.22	61.05
TraesCS3A01G503400.1	Wheat	cytosol	63.49	60.99
KXG34172	Sorghum	nucleus	63.76	60.47
TraesCS3B01G566800.1	Wheat	cytosol	62.13	60.16
Os01t0960500-01	Rice	plasma membrane	63.22	59.95
KRH59596	Soybean	nucleus	68.94	59.39
KRH64018	Soybean	nucleus	69.75	59.26
GSMUA_Achr5P25930_001	Banana	extracellular	38.15	59.07
CDX99619	Canola	cytosol	10.35	55.88
CDY50776	Canola	cytosol	11.17	55.41
CDX67997	Canola	cytosol	56.4	54.76
Zm00001d006136_P001	Maize	cytosol	14.44	54.64
CDX79314	Canola	cytosol, plastid	56.4	54.62
CDX84957	Canola	cytosol	56.13	53.51
CDY27584	Canola	cytosol	33.24	52.59
Zm00001d011821_P007	Maize	cytosol	61.04	52.21
CDX88533	Canola	plastid	56.68	51.61
CDX87387	Canola	plastid	56.13	51.24
GSMUA_Achr5P25940_001	Banana	cytosol	30.25	51.15
CDX85597	Canola	cytosol, plastid	60.22	49.0
CDX91062	Canola	cytosol, plastid	60.22	48.89
KRH40948	Soybean	nucleus	47.41	48.74
CDX74310	Canola	cytosol	59.95	48.03
CDX91935	Canola	cytosol	59.67	47.92
CDY37509	Canola	cytosol	59.95	47.83
CDY49066	Canola	cytosol	59.95	47.83
CDY01855	Canola	cytosol, plastid	56.95	47.39
CDX69581	Canola	nucleus, plastid	59.95	47.21
CDY56212	Canola	plastid	56.68	47.17
CDY09854	Canola	nucleus, plastid	59.67	47.0
CDX70564	Canola	cytosol, plastid	59.95	46.71
CDX78576	Canola	cytosol, plastid	59.4	46.28
HORVU3Hr1G110870.14	Barley	mitochondrion	59.4	45.7
KRH53919	Soybean	nucleus	45.78	44.8
CDY49067	Canola	extracellular	18.26	44.67
TraesCS3A01G503300.1	Wheat	cytosol	55.86	42.89
HORVU3Hr1G110850.8	Barley	cytosol	40.6	42.82
TraesCS3D01G509900.2	Wheat	cytosol	55.86	42.8
TraesCS3B01G566700.1	Wheat	cytosol	54.77	41.36
CDY27585	Canola	cytosol	13.35	37.69
CDX85680	Canola	mitochondrion, plastid	11.99	29.93
CDY52873	Canola	plastid	24.25	29.09
CDX72278	Canola	plastid	27.25	26.95
CDY03984	Canola	cytosol	20.44	25.25
CDX98983	Canola	cytosol, plastid	16.35	24.49
CDY25816	Canola	cytosol	2.45	18.37
CDX98984	Canola	cytosol	22.07	13.8
CDX70026	Canola	cytosol	22.07	13.75
CDX78287	Canola	cytosol	21.25	13.29
CDX81044	Canola	cytosol	21.25	13.29
CDY00235	Canola	cytosol	20.98	13.28
CDX86951	Canola	cytosol	20.44	12.93
CDY06335	Canola	cytosol	20.44	12.86
CDY22660	Canola	cytosol	20.16	12.74

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078HMT8	UniProt:A0A078HMT8	EnsemblPlants:CDY39835
ProteinID:CDY39835	ProteinID:CDY39835.1	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00068658001	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857
PANTHER:PTHR10857:SF98	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EF4BF0
InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf	:	:

Description

BnaC02g42830DBnaC02g42830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMT8]

Coordinates

chrLK032458:+:155139..157197

Molecular Weight (calculated)

41262.1 Da

IEP (calculated)

7.452

GRAVY (calculated)

-0.454

Length

367 amino acids

Sequence
(BLAST)

001: MSRCNKRNQQ PSYIADHFNS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEQAISIIGR TLSPFDEDDL IPCFGFGDAT
101: TRDQYVFSFY PDNKSCEGLD KAVKRYREIV PHLKLSGPTS FAPVIDAAID IVEQNNMQYH VLVIIADGQV TRNPDVPPGR LSPQEEATIN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHRQFDNF QFVNFTEIMS QHKDSAKKET AFALAALMEI PFQYKATLSR DRKQVGGSRL RHKPLPPPPE VIERDNAVRK
301: MPNPVTETAE KSDRTSSVTQ PVCPICLTNP KDMAFSCGHT TCKECGVVVK TCPMCREPIT TRIRLYT

Best Arabidopsis Sequence Match ( AT5G63970.2 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.