CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59596	Soybean	nucleus	75.69	76.76
CDX84471	Canola	cytosol, mitochondrion	60.19	71.63
CDY43775	Canola	cytosol, mitochondrion	60.42	71.12
CDY31343	Canola	cytosol	60.19	70.84
AT5G63970.1	Thale cress	cytosol	60.19	70.84
Bra024254.1-P	Field mustard	mitochondrion	59.95	70.77
VIT_04s0044g01620.t01	Wine grape	cytosol	59.95	70.57
Bra031942.1-P	Field mustard	cytosol, mitochondrion, nucleus	55.79	70.47
CDY39835	Canola	cytosol	59.26	69.75
Solyc09g065870.2.1	Tomato	nucleus	65.28	67.14
GSMUA_Achr10P...	Banana	nucleus	57.87	65.44
KXG34172	Sorghum	nucleus	56.71	63.31
TraesCS3B01G566800.1	Wheat	cytosol	55.32	63.06
TraesCS3A01G503400.1	Wheat	cytosol	55.56	62.83
Os01t0960500-01	Rice	plasma membrane	55.56	62.02
TraesCS3D01G510000.1	Wheat	cytosol	49.07	61.63
KRH53919	Soybean	nucleus	53.47	61.6
KRH43661	Soybean	cytosol	47.69	61.31
GSMUA_Achr5P25930_001	Banana	extracellular	33.1	60.34
KRH40948	Soybean	nucleus	49.77	60.22
KRH07106	Soybean	cytosol, plastid	39.12	58.08
GSMUA_Achr5P25940_001	Banana	cytosol	28.7	57.14
Zm00001d011821_P007	Maize	cytosol	55.56	55.94
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	54.63	55.27
KRG94356	Soybean	nucleus	54.63	55.14
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	54.17	54.67
KRH13149	Soybean	cytosol, plastid	51.62	53.48
KRH44829	Soybean	nucleus, plastid	51.39	52.24
KRH59243	Soybean	endoplasmic reticulum, golgi	53.94	50.65
Zm00001d006136_P001	Maize	cytosol	11.34	50.52
KRH58251	Soybean	nucleus	56.48	49.69
KRH43098	Soybean	endoplasmic reticulum, golgi	52.78	49.57
KRG97516	Soybean	golgi, plasma membrane	51.62	48.58
KRH07102	Soybean	cytosol	15.74	48.57
KRG93947	Soybean	nucleus	55.56	48.39
HORVU3Hr1G110870.14	Barley	mitochondrion	52.78	47.8
KRH31355	Soybean	golgi, plasma membrane	51.16	47.73
TraesCS3A01G503300.1	Wheat	cytosol	51.85	46.86
TraesCS3D01G509900.2	Wheat	cytosol	51.16	46.14
TraesCS3B01G566700.1	Wheat	cytosol	50.93	45.27
HORVU3Hr1G110850.8	Barley	cytosol	36.34	45.11
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	34.26	40.88
KRH20017	Soybean	cytosol	15.97	25.27
KRH68626	Soybean	cytosol	21.99	16.38
KRH54085	Soybean	cytosol	21.76	16.26
KRH41052	Soybean	endoplasmic reticulum	21.3	15.86
KRH68625	Soybean	cytosol	21.53	15.74
KRG96891	Soybean	cytosol	21.53	15.66
KRH63871	Soybean	cytosol	21.53	14.95
KRH13085	Soybean	extracellular, vacuole	17.13	14.18
KRH44834	Soybean	plasma membrane	15.51	13.67
KRH44837	Soybean	extracellular, golgi	16.2	13.57
KRH13151	Soybean	nucleus, vacuole	15.51	12.55

Protein Annotations

EntrezGene:100776002	MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	EMBL:ACUP02002736	InterPro:Copine
EnsemblPlantsGene:GLYMA_04G211000	UniProt:I1JY02	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
EnsemblPlants:KRH64018	ProteinID:KRH64018	ProteinID:KRH64018.1	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR10857	PANTHER:PTHR10857:SF104	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI00023397F9	InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

hypothetical protein

Coordinates

chr4:-:48278319..48285657

Molecular Weight (calculated)

48644.4 Da

IEP (calculated)

5.589

GRAVY (calculated)

-0.544

Length

432 amino acids

Sequence
(BLAST)

001: MGNSESMYES QDNFYQHPPS YYNSYHQPSP YAENSENTTY HEPSSYAWNS SNTTYYQSST YAGSSENTRH QHTRQPTYIA DNFSSLDQVV SSLREAGLES
101: SNLILGIDFT KSNEWTGKHS FHRKSLHHIG NTPNPYEQAI SIVGHTLSSF DEDNLIPCFG FGDASTHDQN VFCFYQDNRF CHGFEEVLAR YREIVPYIKL
201: SGPTSFAPVI DAAIDIVERN NGQYHVLVII ADGQVTRNPD VPYGKLSPQE QATINSIIAA SHYPLSIILV GVGDGPWDEM KYYDDNITER LFDNFQFVNF
301: TKIMSENTEA SKKEATFALA ALMEIPLQYR AAQNIQLNDR ESVLHQHKRP LPPPNEVIHH DNARMAIPHM PNLESAESTA PAAAEPVCPI CLTNPKDMAF
401: GCGHTTCKEC GSTLSSCPMC RHQITTRLRL YT

Best Arabidopsis Sequence Match ( AT5G63970.2 )
(BLAST)

001: MNMSNKRNQQ PSYIADHFSS LDQVITSLRE AGLESSNLIL GIDFTKSNEW TGRYSFNRKS LHAIGKRQNP YEKAISIIGR TLSPFDEDDL IPCFGFGDVT
101: TRDQYVFSFY PENKSCDGLE NAVKRYREIV PHLKLSGPTS FAPVIDAAIN IVEQNNMQYH VLVIIADGQV TRNPDVPLGR LSPQEEATMN SIMAASHYPL
201: SIVLVGVGDG PWDTMKQFDD NIPHREFDNF QFVNFTKIMS EHKDAAKKEA AFALAALMEI PFQYKATLSL NRKPVRSSHQ HHKPLPPPPE VIERDNAVRS
301: VPNQMTETAE KSDRLAPSTV PVCPICLTNP KDMAFSCGHT TCKECGVVIT TCPLCRQPIT TRIRLYT

Arabidopsis Description

RGLG3E3 ubiquitin-protein ligase RGLG3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.