CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0085g01000.t01	Wine grape	extracellular	77.38	67.53
KRH13149	Soybean	cytosol, plastid	80.36	64.75
KRH44829	Soybean	nucleus, plastid	80.06	63.29
Os08t0135400-01	Rice	plasma membrane	75.0	62.84
CDX67997	Canola	cytosol	69.94	62.17
CDX79314	Canola	cytosol, plastid	69.94	62.01
Zm00001d035211_P001	Maize	mitochondrion	72.62	60.4
GSMUA_Achr7P03440_001	Banana	cytosol	56.25	60.38
TraesCS7A01G308900.1	Wheat	mitochondrion	71.43	59.85
GSMUA_AchrUn_...	Banana	mitochondrion	73.21	59.13
TraesCS7D01G305600.1	Wheat	mitochondrion	71.43	59.11
CDX88533	Canola	plastid	70.83	59.06
EES13310	Sorghum	mitochondrion	71.43	58.82
CDX87387	Canola	plastid	70.24	58.71
AT1G79380.1	Thale cress	mitochondrion	69.94	58.6
Bra035112.1-P	Field mustard	plastid	69.94	58.46
CDY50776	Canola	cytosol	12.8	58.11
CDX99619	Canola	cytosol	11.61	57.35
Solyc05g053870.2.1	Tomato	plastid	75.3	56.1
TraesCS7B01G208900.1	Wheat	mitochondrion	68.15	54.52
PGSC0003DMT400040712	Potato	nucleus, plastid	75.0	52.07
KRH54288	Soybean	cytosol, mitochondrion, nucleus, plastid	65.48	51.4
KRH63659	Soybean	cytosol, mitochondrion, nucleus, plastid	64.58	50.82
KRH07102	Soybean	cytosol	21.13	50.71
KRG94356	Soybean	nucleus	62.5	49.07
KRH43098	Soybean	endoplasmic reticulum, golgi	66.96	48.91
KRH59243	Soybean	endoplasmic reticulum, golgi	66.96	48.91
KRH59596	Soybean	nucleus	61.9	48.83
KRH07106	Soybean	cytosol, plastid	41.96	48.45
KRH64018	Soybean	nucleus	61.31	47.69
KRG97516	Soybean	golgi, plasma membrane	64.58	47.28
KRH31355	Soybean	golgi, plasma membrane	64.58	46.87
KRH58251	Soybean	nucleus	65.48	44.81
KRG93947	Soybean	nucleus	65.48	44.35
KRH40948	Soybean	nucleus	44.94	42.3
KRG95016	Soybean	nucleus, peroxisome, plasma membrane	41.37	38.4
KRH53919	Soybean	nucleus	41.96	37.6
KRH20017	Soybean	cytosol	20.24	24.91
KRH68626	Soybean	cytosol	24.4	14.14
KRH41052	Soybean	endoplasmic reticulum	22.92	13.28
KRH68625	Soybean	cytosol	23.21	13.2
KRH44837	Soybean	extracellular, golgi	20.24	13.18
KRH54085	Soybean	cytosol	22.32	12.98
KRH13085	Soybean	extracellular, vacuole	19.94	12.84
KRG96891	Soybean	cytosol	22.62	12.79
KRH63871	Soybean	cytosol	22.62	12.22
KRH44834	Soybean	plasma membrane	16.96	11.63
KRH13151	Soybean	nucleus, vacuole	18.45	11.61

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	Gene3D:3.40.50.410	UniProt:A0A0R0IN04	EMBL:ACUP02004877
InterPro:Copine	EnsemblPlantsGene:GLYMA_08G1630001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
EnsemblPlants:KRH43661	ProteinID:KRH43661	ProteinID:KRH43661.1	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR10857	PANTHER:PTHR10857:SF47	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0006EDDEBF
InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

hypothetical protein

Coordinates

chr8:+:12763828..12768066

Molecular Weight (calculated)

36883.8 Da

IEP (calculated)

6.103

GRAVY (calculated)

-0.247

Length

336 amino acids

Sequence
(BLAST)

001: VTTALRKEGL ESSNLILGID FTKSNEWTGR ISFNKRSLHA IGSTPNPYEK AISIIGKTLA PFDDDNLIPC FGFGDATTHD QEVFSFHSDH SPYHGFEEVL
101: ACYQKIVPNL KLSGPTSYAP VIEAAIDIVE KNRGQFHVLV IVADGQVTRS VDTSDGELSP QEEKTIKAVV DASAYPLAIV LVGVGDGPWE DMRKFDDKIP
201: ARDYDNFQFV NFTEIMSKNI SPSEKEAAFA LAALMEIPFQ YKATMEFGIL GRVTGRAKRI VPKPPPVPYS RPAPSINTAA SSGDDQNQTA CPVCLTNARD
301: LAFGCGHMTC RECGHKLTNC PMCRERITSR LRVYSG

Best Arabidopsis Sequence Match ( AT1G67800.1 )
(BLAST)

001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY

Arabidopsis Description

Copine (Calcium-dependent phospholipid-binding protein) family [Source:UniProtKB/TrEMBL;Acc:F4HTR6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.