CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035112.1-P	Field mustard	plastid	99.0	99.0
CDX88533	Canola	plastid	97.51	97.27
CDX79314	Canola	cytosol, plastid	83.58	88.65
CDX67997	Canola	cytosol	83.08	88.36
AT1G79380.1	Thale cress	mitochondrion	84.58	84.79
KRH43661	Soybean	cytosol	58.71	70.24
CDX99619	Canola	cytosol	11.44	67.65
CDY50776	Canola	cytosol	12.44	67.57
VIT_19s0085g01000.t01	Wine grape	extracellular	60.2	62.86
KRH13149	Soybean	cytosol, plastid	65.17	62.83
KRH44829	Soybean	nucleus, plastid	65.92	62.35
TraesCS7A01G308900.1	Wheat	mitochondrion	61.44	61.6
Os08t0135400-01	Rice	plasma membrane	60.2	60.35
TraesCS7D01G305600.1	Wheat	mitochondrion	60.95	60.34
Zm00001d035211_P001	Maize	mitochondrion	59.7	59.41
GSMUA_AchrUn_...	Banana	mitochondrion	61.44	59.38
EES13310	Sorghum	mitochondrion	60.2	59.31
Solyc05g053870.2.1	Tomato	plastid	66.42	59.2
GSMUA_Achr7P03440_001	Banana	cytosol	46.02	59.11
CDX84471	Canola	cytosol, mitochondrion	50.99	56.47
CDY27584	Canola	cytosol	32.59	56.47
CDY31343	Canola	cytosol	51.49	56.4
CDY39835	Canola	cytosol	51.24	56.13
CDY43775	Canola	cytosol, mitochondrion	50.99	55.86
TraesCS7B01G208900.1	Wheat	mitochondrion	57.71	55.24
CDX84957	Canola	cytosol	52.74	55.06
PGSC0003DMT400040712	Potato	nucleus, plastid	66.17	54.96
CDX85597	Canola	cytosol, plastid	54.73	48.78
CDX91062	Canola	cytosol, plastid	53.73	47.79
CDY01855	Canola	cytosol, plastid	51.99	47.39
CDX91935	Canola	cytosol	53.73	47.26
CDX69581	Canola	nucleus, plastid	54.73	47.21
CDX74310	Canola	cytosol	53.73	47.16
CDY56212	Canola	plastid	51.49	46.94
CDY37509	Canola	cytosol	53.48	46.74
CDY49066	Canola	cytosol	53.48	46.74
CDY49067	Canola	extracellular	17.41	46.67
CDY09854	Canola	nucleus, plastid	53.98	46.57
CDX70564	Canola	cytosol, plastid	53.98	46.07
CDX78576	Canola	cytosol, plastid	52.99	45.22
CDY27585	Canola	cytosol	13.93	43.08
CDX85680	Canola	mitochondrion, plastid	14.93	40.82
CDY52873	Canola	plastid	28.36	37.25
CDX72278	Canola	plastid	30.85	33.42
CDY03984	Canola	cytosol	21.64	29.29
CDX98983	Canola	cytosol, plastid	14.18	23.27
CDY25816	Canola	cytosol	1.74	14.29
CDX98984	Canola	cytosol	19.9	13.63
CDY00235	Canola	cytosol	19.65	13.62
CDX70026	Canola	cytosol	19.9	13.58
CDX81044	Canola	cytosol	19.65	13.46
CDX78287	Canola	cytosol	19.65	13.46
CDY06335	Canola	cytosol	19.4	13.38
CDX86951	Canola	cytosol	19.15	13.28
CDY22660	Canola	cytosol	19.15	13.25

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.2.1.6.2	Gene3D:3.30.40.10	GO:A0A078DEA5	EnsemblPlants:CDX87387	ProteinID:CDX87387
ProteinID:CDX87387.1	InterPro:Copine	EnsemblPlantsGene:GSBRNA2T00146358001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF07002	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EEE98B	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

BnaA07g34860D

Coordinates

chrLK031850:-:379412..382534

Molecular Weight (calculated)

43962.1 Da

IEP (calculated)

6.006

GRAVY (calculated)

-0.339

Length

402 amino acids

Sequence
(BLAST)

001: MSTGMGNFLR KLGSGKSKSS RSFRGERTTS SSVSNEPSPS DASVSVSDKI NAAKKKYALI PDRFSSLDQV SKALREAGLE SSNLILGIDF TKSNEWTGKT
101: SFEGKCLHAL GETPNPYEKA IFVIGQTLAP FDEDNLIPCF GFGDSTTHDE EVFGFHSDNS PCHGFEEVLA CYRRIAPNLR LSGPTSYGPL IDAAVDIVEK
201: NNGQFHVLVI VADGQVTRGL DMPEGELSQQ EKTTIDAIVN ASSYALSIIL IGVGDGPWED MRKFDDKIPK REFDNFQFVN FTEIMKRDTQ QSAKETAFAL
301: AALMEIPCQY QAAIELGLLG KTTGLAKKIN PRPPPVPYTP PVRTGQASSD SDEQTQNCPI CLTNRKDVAF GCGHMTCREC GSRISNCPIC RVLITSRLRL
401: YT

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.