CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52873	Canola	plastid	74.15	35.62
CDX72278	Canola	plastid	78.91	31.27
Bra021976.1-P	Field mustard	plastid	73.47	29.03
CDY27584	Canola	cytosol	32.65	20.69
CDX79314	Canola	cytosol, plastid	42.18	16.36
CDX67997	Canola	cytosol	41.5	16.14
CDX87387	Canola	plastid	40.82	14.93
CDX88533	Canola	plastid	40.82	14.89
CDX84957	Canola	cytosol	32.65	12.47
CDX84471	Canola	cytosol, mitochondrion	30.61	12.4
CDY43775	Canola	cytosol, mitochondrion	30.61	12.26
CDY31343	Canola	cytosol	29.93	11.99
CDY39835	Canola	cytosol	29.93	11.99
CDY56212	Canola	plastid	34.01	11.34
CDY01855	Canola	cytosol, plastid	34.01	11.34
CDX85597	Canola	cytosol, plastid	32.65	10.64
CDX91062	Canola	cytosol, plastid	32.65	10.62
CDX91935	Canola	cytosol	32.65	10.5
CDX74310	Canola	cytosol	32.65	10.48
CDY49066	Canola	cytosol	32.65	10.43
CDY37509	Canola	cytosol	32.65	10.43
CDX69581	Canola	nucleus, plastid	32.65	10.3
CDY09854	Canola	nucleus, plastid	31.97	10.09
CDX78576	Canola	cytosol, plastid	31.97	9.98
CDX70564	Canola	cytosol, plastid	31.97	9.98
CDX98983	Canola	cytosol, plastid	12.24	7.35
CDY03984	Canola	cytosol	10.2	5.05
CDY00235	Canola	cytosol	19.73	5.0
CDX78287	Canola	cytosol	19.73	4.94
CDX81044	Canola	cytosol	19.73	4.94
CDX86951	Canola	cytosol	19.05	4.83
OQU79015	Sorghum	mitochondrion	2.72	4.82
CDX98984	Canola	cytosol	19.05	4.77
CDX70026	Canola	cytosol	19.05	4.75
CDY22660	Canola	cytosol	18.37	4.65
CDY06335	Canola	cytosol	18.37	4.63
GSMUA_AchrUn_...	Banana	cytosol	5.44	4.3
CDX99619	Canola	cytosol	0.68	1.47
CDY50776	Canola	cytosol	0.68	1.35
CDY49067	Canola	extracellular	0.68	0.67
CDY27585	Canola	cytosol	0.0	0.0
CDY25816	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX85680	EnsemblPlantsGene:GSBRNA2T00143418001	InterPro:Copine	PANTHER:PTHR10857	PANTHER:PTHR10857:SF47	PFAM:PF07002
ProteinID:CDX85680	ProteinID:CDX85680.1	UniParc:UPI0004EE1D14	MapMan:35.1	:	:

Description

BnaA02g01330D

Coordinates

chrLK031842:-:1173915..1174432

Molecular Weight (calculated)

16340.3 Da

IEP (calculated)

6.790

GRAVY (calculated)

0.025

Length

147 amino acids

Sequence
(BLAST)

001: MRTSYVVIRF SNLSAPLSQA STTLSFRIYH LHGVLATSHR LGIVIDTDLG KLRSALREIV NPYENAIFVI GKTLAPSDED NFISCFGFVD STTHGEEVFS
101: LHSDNSPSHG FEDVLPCYRG FTPNFPLSGI FPLFSNISTF STKQSRF

Best Arabidopsis Sequence Match ( AT1G79380.1 )
(BLAST)

001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T

Arabidopsis Description

RGLG4E3 ubiquitin-protein ligase RGLG4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAL0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.